Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.26■□□□□ 0.83
MSX2P35548 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.26■□□□□ 0.83
MSX2P35548 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
MSX2P35548 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.26■□□□□ 0.83
MSX2P35548 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
MSX2P35548 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSX2P35548 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.26■□□□□ 0.83
MSX2P35548 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.25■□□□□ 0.83
MSX2P35548 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.25■□□□□ 0.83
MSX2P35548 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.25■□□□□ 0.83
MSX2P35548 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.25■□□□□ 0.83
MSX2P35548 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.25■□□□□ 0.83
MSX2P35548 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.25■□□□□ 0.83
MSX2P35548 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.25■□□□□ 0.83
MSX2P35548 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSX2P35548 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MSX2P35548 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MSX2P35548 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 TSPY13P-201ENST00000338964 914 ntBASIC20.24■□□□□ 0.83
MSX2P35548 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.24■□□□□ 0.83
MSX2P35548 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.24■□□□□ 0.83
MSX2P35548 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.24■□□□□ 0.83
MSX2P35548 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.24■□□□□ 0.83
MSX2P35548 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSX2P35548 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.24■□□□□ 0.83
MSX2P35548 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
MSX2P35548 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSX2P35548 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
MSX2P35548 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX2P35548 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.23■□□□□ 0.83
MSX2P35548 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
MSX2P35548 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX2P35548 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.23■□□□□ 0.83
MSX2P35548 AC079089.2-201ENST00000531211 1277 ntBASIC20.23■□□□□ 0.83
MSX2P35548 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
MSX2P35548 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.23■□□□□ 0.83
MSX2P35548 AL049796.1-201ENST00000565336 1766 ntBASIC20.23■□□□□ 0.83
MSX2P35548 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX2P35548 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX2P35548 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSX2P35548 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
MSX2P35548 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.22■□□□□ 0.83
MSX2P35548 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.22■□□□□ 0.83
MSX2P35548 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.22■□□□□ 0.83
MSX2P35548 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSX2P35548 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.22■□□□□ 0.83
MSX2P35548 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
MSX2P35548 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.21■□□□□ 0.83
MSX2P35548 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.21■□□□□ 0.83
MSX2P35548 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.21■□□□□ 0.83
MSX2P35548 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSX2P35548 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.21■□□□□ 0.83
MSX2P35548 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms