Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC28.39■■■□□ 2.13
CSB-PGBD3P0DP91 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.39■■■□□ 2.13
CSB-PGBD3P0DP91 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
CSB-PGBD3P0DP91 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 ARL16-209ENST00000573715 763 ntTSL 3 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 ARL16-211ENST00000576135 694 ntTSL 3 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 MYC-209ENST00000641252 345 ntBASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
CSB-PGBD3P0DP91 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 ISCU-212ENST00000547005 795 ntTSL 3 BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CSB-PGBD3P0DP91 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 ADM-205ENST00000528544 586 ntTSL 2 BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 AP006294.2-201ENST00000641667 209 ntBASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CSB-PGBD3P0DP91 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 AC091874.3-201ENST00000512672 1195 ntBASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC28.35■■■□□ 2.13
CSB-PGBD3P0DP91 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 GCSHP5-201ENST00000443090 522 ntBASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CSB-PGBD3P0DP91 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 POU5F1P4-201ENST00000413175 1085 ntBASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 AL158047.1-201ENST00000445918 881 ntBASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 RNF146-206ENST00000480444 843 ntTSL 2 BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 AC006058.3-201ENST00000606217 1069 ntBASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CSB-PGBD3P0DP91 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC28.33■■■□□ 2.12
CSB-PGBD3P0DP91 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
CSB-PGBD3P0DP91 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 AC010980.2-201ENST00000587099 1412 ntBASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
CSB-PGBD3P0DP91 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 GAS7-202ENST00000396115 929 ntTSL 5 BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 AL591742.1-201ENST00000604433 565 ntBASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 FGF8-207ENST00000618991 856 ntTSL 3 BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CSB-PGBD3P0DP91 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms