Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MT-ND4P03905 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MT-ND4P03905 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MT-ND4P03905 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 AC009086.3-201ENST00000623486 1008 ntBASIC18.43■□□□□ 0.54
MT-ND4P03905 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.43■□□□□ 0.54
MT-ND4P03905 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
MT-ND4P03905 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MT-ND4P03905 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MT-ND4P03905 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.42■□□□□ 0.54
MT-ND4P03905 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MT-ND4P03905 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.42■□□□□ 0.54
MT-ND4P03905 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.42■□□□□ 0.54
MT-ND4P03905 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.42■□□□□ 0.54
MT-ND4P03905 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MT-ND4P03905 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MT-ND4P03905 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
MT-ND4P03905 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
MT-ND4P03905 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
MT-ND4P03905 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MT-ND4P03905 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.41■□□□□ 0.54
MT-ND4P03905 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MT-ND4P03905 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MT-ND4P03905 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.41■□□□□ 0.54
MT-ND4P03905 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MT-ND4P03905 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.41■□□□□ 0.54
MT-ND4P03905 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.41■□□□□ 0.54
MT-ND4P03905 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MT-ND4P03905 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MT-ND4P03905 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.41■□□□□ 0.54
MT-ND4P03905 FEM1AP1-201ENST00000431297 1995 ntBASIC18.41■□□□□ 0.54
MT-ND4P03905 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
MT-ND4P03905 C17orf82-201ENST00000623772 1530 ntBASIC18.4■□□□□ 0.54
MT-ND4P03905 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 UNC93B8-201ENST00000511903 705 ntBASIC18.4■□□□□ 0.54
MT-ND4P03905 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.4■□□□□ 0.54
MT-ND4P03905 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MT-ND4P03905 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MT-ND4P03905 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.39■□□□□ 0.54
MT-ND4P03905 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.39■□□□□ 0.53
MT-ND4P03905 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 MIR6724-1-201ENST00000616420 92 ntBASIC18.39■□□□□ 0.53
MT-ND4P03905 MIR6724-2-201ENST00000616483 92 ntBASIC18.39■□□□□ 0.53
MT-ND4P03905 MIR6724-4-201ENST00000617390 92 ntBASIC18.39■□□□□ 0.53
MT-ND4P03905 MIR6724-3-201ENST00000622482 92 ntBASIC18.39■□□□□ 0.53
MT-ND4P03905 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.39■□□□□ 0.53
MT-ND4P03905 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MT-ND4P03905 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms