Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.619e-8■■■□□ 18.2
SMNDC1O75940 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.45■□□□□ 0.389e-8■■■□□ 18.2
SMNDC1O75940 SPPL2B-210ENST00000614784 1411 ntTSL 1 (best)15.92■□□□□ 0.144e-6■■■□□ 18.2
SMNDC1O75940 SPPL2B-208ENST00000612623 495 ntTSL 515.01□□□□□ -0.014e-6■■■□□ 18.2
SMNDC1O75940 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC8.41□□□□□ -1.061e-9■■■□□ 18.2
SMNDC1O75940 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.541e-6■■■□□ 18.2
SMNDC1O75940 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.281e-6■■■□□ 18.2
SMNDC1O75940 DDX39B-204ENST00000418897 583 ntTSL 310.83□□□□□ -0.681e-323■■■□□ 18.2
SMNDC1O75940 DDX39B-213ENST00000456976 720 ntTSL 510.83□□□□□ -0.681e-323■■■□□ 18.2
SMNDC1O75940 DDX39B-205ENST00000419020 583 ntTSL 310.55□□□□□ -0.721e-323■■■□□ 18.2
SMNDC1O75940 DDX39B-209ENST00000428450 633 ntTSL 410.43□□□□□ -0.741e-323■■■□□ 18.2
SMNDC1O75940 ATP6V1G2-DDX39B-203ENST00000480131 552 ntAPPRIS P1 TSL 49.98□□□□□ -0.811e-323■■■□□ 18.2
SMNDC1O75940 DDX39B-211ENST00000449757 591 ntTSL 39.38□□□□□ -0.911e-323■■■□□ 18.2
SMNDC1O75940 SNORD84-203ENST00000584275 78 ntBASIC4.66□□□□□ -1.661e-323■■■□□ 18.2
SMNDC1O75940 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.93■□□□□ 0.783e-7■■■□□ 18.2
SMNDC1O75940 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.61■□□□□ 0.413e-7■■■□□ 18.2
SMNDC1O75940 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.333e-7■■■□□ 18.2
SMNDC1O75940 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.11■□□□□ 0.333e-7■■■□□ 18.2
SMNDC1O75940 PABPC4-205ENST00000421687 1663 ntTSL 512.41□□□□□ -0.423e-7■■■□□ 18.2
SMNDC1O75940 PABPC4-222ENST00000527718 746 ntTSL 55.85□□□□□ -1.473e-7■■■□□ 18.2
SMNDC1O75940 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.125e-9■■■□□ 18.1
SMNDC1O75940 FADS1-208ENST00000473263 574 ntTSL 418.73■□□□□ 0.595e-9■■■□□ 18.1
SMNDC1O75940 NSUN2-203ENST00000504374 3217 ntTSL 218.02■□□□□ 0.475e-9■■■□□ 18.1
SMNDC1O75940 ABHD17A-206ENST00000592757 740 ntTSL 317.35■□□□□ 0.375e-9■■■□□ 18.1
SMNDC1O75940 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.335e-9■■■□□ 18.1
SMNDC1O75940 FADS1-218ENST00000544696 567 ntTSL 317.12■□□□□ 0.335e-9■■■□□ 18.1
SMNDC1O75940 NSUN2-205ENST00000505892 3558 ntTSL 1 (best)8.43□□□□□ -1.065e-9■■■□□ 18.1
SMNDC1O75940 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC14.97□□□□□ -0.013e-6■■■□□ 18.1
SMNDC1O75940 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.393e-6■■■□□ 18.1
SMNDC1O75940 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC12.19□□□□□ -0.463e-6■■■□□ 18.1
SMNDC1O75940 CDC45-203ENST00000407835 2090 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.753e-6■■■□□ 18.1
SMNDC1O75940 NFKBIA-206ENST00000556664 381 ntTSL 210.21□□□□□ -0.771e-6■■■□□ 18.1
SMNDC1O75940 ISYNA1-213ENST00000583534 629 ntTSL 1 (best)18.48■□□□□ 0.551e-6■■■□□ 18.1
SMNDC1O75940 ISYNA1-208ENST00000581800 627 ntTSL 414.31□□□□□ -0.121e-6■■■□□ 18.1
SMNDC1O75940 EEF1A1-204ENST00000356303 635 ntTSL 28.09□□□□□ -1.115e-9■■■□□ 18.1
SMNDC1O75940 VAPA-205ENST00000578314 532 ntTSL 320.59■□□□□ 0.891e-7■■■□□ 18.1
SMNDC1O75940 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.8■□□□□ 0.761e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-230ENST00000566099 1316 ntTSL 519.79■□□□□ 0.761e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-235ENST00000567163 1356 ntTSL 519.6■□□□□ 0.731e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-219ENST00000564570 803 ntTSL 519.29■□□□□ 0.681e-7■■■□□ 18.1
SMNDC1O75940 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.611e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.34■□□□□ 0.531e-7■■■□□ 18.1
SMNDC1O75940 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.32■□□□□ 0.521e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-240ENST00000569176 966 ntTSL 218.09■□□□□ 0.491e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-202ENST00000377824 1844 ntTSL 217.69■□□□□ 0.421e-7■■■□□ 18.1
SMNDC1O75940 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.42e-6■■■□□ 18.1
SMNDC1O75940 LIG1-206ENST00000594067 2697 ntTSL 217.41■□□□□ 0.381e-10■■■□□ 18.1
SMNDC1O75940 LCAT-208ENST00000575467 842 ntTSL 517.32■□□□□ 0.361e-7■■■□□ 18.1
SMNDC1O75940 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.343e-6■■■□□ 18.1
SMNDC1O75940 GRHPR-207ENST00000491488 602 ntTSL 517.19■□□□□ 0.341e-7■■■□□ 18.1
SMNDC1O75940 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.321e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-211ENST00000563368 755 ntTSL 316.31■□□□□ 0.21e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-212ENST00000563441 2664 ntTSL 1 (best)16.22■□□□□ 0.191e-7■■■□□ 18.1
SMNDC1O75940 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.121e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.51■□□□□ 0.071e-7■■■□□ 18.1
SMNDC1O75940 NOP9-203ENST00000557362 455 ntTSL 515.44■□□□□ 0.061e-7■■■□□ 18.1
SMNDC1O75940 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.041e-10■■■□□ 18.1
SMNDC1O75940 LIG1-204ENST00000542460 1527 ntTSL 215.17■□□□□ 0.021e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -01e-7■■■□□ 18.1
SMNDC1O75940 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.021e-7■■■□□ 18.1
SMNDC1O75940 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.041e-10■■■□□ 18.1
SMNDC1O75940 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.71□□□□□ -0.051e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-203ENST00000460882 1080 ntTSL 1 (best)14.65□□□□□ -0.061e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-208ENST00000493368 1136 ntTSL 1 (best)14.5□□□□□ -0.091e-7■■■□□ 18.1
SMNDC1O75940 VAPA-204ENST00000577901 917 ntTSL 214.36□□□□□ -0.111e-7■■■□□ 18.1
SMNDC1O75940 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.111e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC14.3□□□□□ -0.121e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-229ENST00000566013 775 ntTSL 314.12□□□□□ -0.151e-7■■■□□ 18.1
SMNDC1O75940 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.72□□□□□ -0.211e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-220ENST00000564785 4820 ntTSL 513.69□□□□□ -0.221e-7■■■□□ 18.1
SMNDC1O75940 LIG1-215ENST00000597901 565 ntTSL 413.55□□□□□ -0.241e-7■■■□□ 18.1
SMNDC1O75940 VAPA-209ENST00000585042 567 ntTSL 413.54□□□□□ -0.241e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-201ENST00000267978 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.261e-7■■■□□ 18.1
SMNDC1O75940 LIG1-207ENST00000594759 4102 ntTSL 1 (best)13.34□□□□□ -0.271e-10■■■□□ 18.1
SMNDC1O75940 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC13.16□□□□□ -0.31e-10■■■□□ 18.1
SMNDC1O75940 LIG1-201ENST00000263274 3384 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31e-10■■■□□ 18.1
SMNDC1O75940 ARFGAP1-219ENST00000524192 980 ntTSL 213.09□□□□□ -0.312e-7■■■□□ 18.1
SMNDC1O75940 GTF3C1-211ENST00000569653 897 ntTSL 212.44□□□□□ -0.421e-7■■■□□ 18.1
SMNDC1O75940 MAN2C1-224ENST00000565683 3300 ntTSL 1 (best) BASIC12.33□□□□□ -0.441e-7■■■□□ 18.1
SMNDC1O75940 GRHPR-206ENST00000487399 952 ntTSL 212.26□□□□□ -0.451e-7■■■□□ 18.1
SMNDC1O75940 GTF3C1-201ENST00000356183 7018 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.551e-7■■■□□ 18.1
SMNDC1O75940 SLC7A5-203ENST00000565644 3983 ntTSL 1 (best) BASIC11.34□□□□□ -0.591e-7■■■□□ 18.1
SMNDC1O75940 TRAF4-208ENST00000469529 788 ntTSL 211.33□□□□□ -0.61e-7■■■□□ 18.1
SMNDC1O75940 GTF3C1-204ENST00000564664 933 ntTSL 510.97□□□□□ -0.651e-7■■■□□ 18.1
SMNDC1O75940 LIG1-220ENST00000601091 3957 ntTSL 510.84□□□□□ -0.671e-10■■■□□ 18.1
SMNDC1O75940 GTF3C1-209ENST00000568569 540 ntTSL 510.72□□□□□ -0.691e-7■■■□□ 18.1
SMNDC1O75940 ARFGAP1-223ENST00000550188 572 ntTSL 510.7□□□□□ -0.72e-7■■■□□ 18.1
SMNDC1O75940 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.71e-7■■■□□ 18.1
SMNDC1O75940 TRAF4-206ENST00000454852 672 ntTSL 39.87□□□□□ -0.831e-7■■■□□ 18.1
SMNDC1O75940 GTF3C1-212ENST00000570129 505 ntTSL 58.76□□□□□ -1.011e-7■■■□□ 18.1
SMNDC1O75940 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.281e-7■■■□□ 18.1
SMNDC1O75940 VAPA-208ENST00000584796 654 ntTSL 36.21□□□□□ -1.421e-7■■■□□ 18.1
SMNDC1O75940 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.571e-7■■■□□ 18.1
SMNDC1O75940 PUS10-206ENST00000602599 6366 ntTSL 1 (best)4.47□□□□□ -1.691e-7■■■□□ 18.1
SMNDC1O75940 RNA5SP450-201ENST00000411206 102 ntBASIC2.48□□□□□ -2.011e-7■■■□□ 18.1
SMNDC1O75940 NOL4L-201ENST00000201961 971 ntAPPRIS ALT2 TSL 321.28■■□□□ 13e-6■■■□□ 18.1
SMNDC1O75940 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.131e-34■■■□□ 18.1
SMNDC1O75940 TXNIP-203ENST00000488537 1509 ntTSL 56.58□□□□□ -1.361e-34■■■□□ 18.1
SMNDC1O75940 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.97□□□□□ -1.611e-34■■■□□ 18.1
SMNDC1O75940 TXNIP-202ENST00000486597 509 ntTSL 24.26□□□□□ -1.731e-34■■■□□ 18.1
Retrieved 100 of 11,362 protein–RNA pairs in 179.7 ms