RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NISCHQ9Y2I1 1504 aa24.87■■□□□ 1.57
LIG1-201ENST00000263274 SHROOM4Q9ULL8 1493 aa22.2■■□□□ 1.14
LIG1-201ENST00000263274 SUPT5HO00267 1087 aaKnown RBP21.95■■□□□ 1.1
LIG1-201ENST00000263274 DCAF8L2P0C7V8 631 aa21.73■■□□□ 1.07
LIG1-201ENST00000263274 CHIC1Q5VXU3 224 aa21.02■□□□□ 0.96
LIG1-201ENST00000263274 ZCCHC6Q5VYS8 1495 aaKnown RBP20.97■□□□□ 0.95
LIG1-201ENST00000263274 PCGF6Q9BYE7 350 aa20.93■□□□□ 0.94
LIG1-201ENST00000263274 MYO15BQ96JP2 1530 aa20.8■□□□□ 0.92
LIG1-201ENST00000263274 ABCC9O60706 1549 aa20.77■□□□□ 0.91
LIG1-201ENST00000263274 HRCP23327 699 aa20.72■□□□□ 0.91
LIG1-201ENST00000263274 LOC105371045A0A1W2PR82 267 aa20.7■□□□□ 0.9
LIG1-201ENST00000263274 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
LIG1-201ENST00000263274 PPARGC1BQ86YN6 1023 aaKnown RBP20.59■□□□□ 0.89
LIG1-201ENST00000263274 EHMT2Q96KQ7 1210 aa20.52■□□□□ 0.88
LIG1-201ENST00000263274 FAM9AQ8IZU1 332 aaPredicted RBP20.42■□□□□ 0.86
LIG1-201ENST00000263274 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
LIG1-201ENST00000263274 TRIM26Q12899 539 aaPredicted RBP20.18■□□□□ 0.82
LIG1-201ENST00000263274 DCAF1Q9Y4B6 1507 aa20.07■□□□□ 0.8
LIG1-201ENST00000263274 SCRIBQ14160 1630 aa19.99■□□□□ 0.79
LIG1-201ENST00000263274 RSF1Q96T23 1441 aaPredicted RBP19.91■□□□□ 0.78
LIG1-201ENST00000263274 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
LIG1-201ENST00000263274 PELP1Q8IZL8 1130 aaKnown RBP19.83■□□□□ 0.76
LIG1-201ENST00000263274 PABPN1Q86U42 306 aaKnown RBP eCLIP19.83■□□□□ 0.762e-6■■■■□ 25.6
LIG1-201ENST00000263274 ZEB1P37275 1124 aaPredicted RBP19.77■□□□□ 0.76
LIG1-201ENST00000263274 RB1CC1Q8TDY2 1594 aa19.7■□□□□ 0.74
LIG1-201ENST00000263274 CECR2Q9BXF3 1484 aa19.64■□□□□ 0.73
LIG1-201ENST00000263274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.62■□□□□ 0.73
LIG1-201ENST00000263274 CCER1Q8TC90 406 aaPredicted RBP19.6■□□□□ 0.73
LIG1-201ENST00000263274 NACADO15069 1562 aa19.52■□□□□ 0.72
LIG1-201ENST00000263274 MROH2BQ7Z745 1585 aa19.47■□□□□ 0.71
LIG1-201ENST00000263274 UBTFP17480 764 aaKnown RBP19.4■□□□□ 0.7
LIG1-201ENST00000263274 WIZO95785 1651 aa19.36■□□□□ 0.69
LIG1-201ENST00000263274 RANGAP1P46060 587 aaPredicted RBP19.31■□□□□ 0.68
LIG1-201ENST00000263274 SCAF1Q9H7N4 1312 aaKnown RBP19.31■□□□□ 0.68
LIG1-201ENST00000263274 DIEXFQ68CQ4 756 aaKnown RBP19.19■□□□□ 0.66
LIG1-201ENST00000263274 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
LIG1-201ENST00000263274 HNRNPUL2Q1KMD3 747 aaKnown RBP19.14■□□□□ 0.65
LIG1-201ENST00000263274 CSRNP3Q8WYN3 585 aa19.13■□□□□ 0.65
LIG1-201ENST00000263274 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
LIG1-201ENST00000263274 MYT1Q01538 1121 aa19.11■□□□□ 0.65
LIG1-201ENST00000263274 YTHDC1Q96MU7 727 aaKnown RBP19.1■□□□□ 0.65
LIG1-201ENST00000263274 SOGA1O94964 1423 aa19.1■□□□□ 0.65
LIG1-201ENST00000263274 NEUROD1Q13562 356 aa19.09■□□□□ 0.65
LIG1-201ENST00000263274 BAZ1AQ9NRL2 1556 aaPredicted RBP19.08■□□□□ 0.64
LIG1-201ENST00000263274 CEP162Q5TB80 1403 aa19.06■□□□□ 0.64
LIG1-201ENST00000263274 ACIN1Q9UKV3 1341 aaKnown RBP19.05■□□□□ 0.64
LIG1-201ENST00000263274 CENPBP07199 599 aaPredicted RBP19.05■□□□□ 0.64
LIG1-201ENST00000263274 APLP2Q06481 763 aa19.04■□□□□ 0.64
LIG1-201ENST00000263274 GTF3C3Q9Y5Q9 886 aa19.01■□□□□ 0.63
LIG1-201ENST00000263274 RUSC2Q8N2Y8 1516 aa18.98■□□□□ 0.63
LIG1-201ENST00000263274 UNC13AQ9UPW8 1703 aa18.97■□□□□ 0.63
LIG1-201ENST00000263274 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
LIG1-201ENST00000263274 TNIKQ9UKE5 1360 aa18.91■□□□□ 0.62
LIG1-201ENST00000263274 TOP2AP11388 1531 aaKnown RBP18.89■□□□□ 0.62
LIG1-201ENST00000263274 ZNF316A6NFI3 1004 aaPredicted RBP18.89■□□□□ 0.61
LIG1-201ENST00000263274 SMARCA4P51532 1647 aa18.85■□□□□ 0.61
LIG1-201ENST00000263274 SMARCA2P51531 1590 aa18.83■□□□□ 0.61
LIG1-201ENST00000263274 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.6
LIG1-201ENST00000263274 DNAJC5BQ9UF47 199 aa18.79■□□□□ 0.6
LIG1-201ENST00000263274 GOLGA3Q08378 1498 aa18.77■□□□□ 0.6
LIG1-201ENST00000263274 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
LIG1-201ENST00000263274 MIER1Q8N108 512 aa18.74■□□□□ 0.59
LIG1-201ENST00000263274 EEA1Q15075 1411 aa18.74■□□□□ 0.59
LIG1-201ENST00000263274 CLIP1P30622 1438 aa18.72■□□□□ 0.59
LIG1-201ENST00000263274 ITGAEP38570 1179 aa18.71■□□□□ 0.59
LIG1-201ENST00000263274 CEP164Q9UPV0 1460 aa18.61■□□□□ 0.57
LIG1-201ENST00000263274 RAPGEF2Q9Y4G8 1499 aa18.55■□□□□ 0.56
LIG1-201ENST00000263274 BAZ1BQ9UIG0 1483 aaKnown RBP18.53■□□□□ 0.56
LIG1-201ENST00000263274 ATP1B4Q9UN42 357 aaPredicted RBP18.53■□□□□ 0.56
LIG1-201ENST00000263274 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
LIG1-201ENST00000263274 VPS8Q8N3P4 1428 aa18.51■□□□□ 0.55
LIG1-201ENST00000263274 KANK4Q5T7N3 995 aaPredicted RBP18.48■□□□□ 0.55
LIG1-201ENST00000263274 PRKCSHP14314 528 aaPredicted RBP18.46■□□□□ 0.55
LIG1-201ENST00000263274 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
LIG1-201ENST00000263274 CC2D2AQ9P2K1 1620 aa18.4■□□□□ 0.54
LIG1-201ENST00000263274 P3H3Q8IVL6 736 aa18.36■□□□□ 0.53
LIG1-201ENST00000263274 KIF21BO75037 1637 aa18.33■□□□□ 0.52
LIG1-201ENST00000263274 FAM50AQ14320 339 aaKnown RBP18.31■□□□□ 0.52
LIG1-201ENST00000263274 DHX57Q6P158 1386 aaKnown RBP18.27■□□□□ 0.52
LIG1-201ENST00000263274 KIF27Q86VH2 1401 aa18.21■□□□□ 0.51
LIG1-201ENST00000263274 HIRIP3Q9BW71 556 aaPredicted RBP18.21■□□□□ 0.5
LIG1-201ENST00000263274 PEG3Q9GZU2 1588 aa18.2■□□□□ 0.5
LIG1-201ENST00000263274 BCANQ96GW7 911 aa18.19■□□□□ 0.5
LIG1-201ENST00000263274 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
LIG1-201ENST00000263274 CCNB3Q8WWL7 1395 aa18.17■□□□□ 0.5
LIG1-201ENST00000263274 DDX10Q13206 875 aaKnown RBP18.16■□□□□ 0.5
LIG1-201ENST00000263274 KCNH8Q96L42 1107 aa18.16■□□□□ 0.5
LIG1-201ENST00000263274 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
LIG1-201ENST00000263274 CLSPNQ9HAW4 1339 aa18.15■□□□□ 0.5
LIG1-201ENST00000263274 NCAPD3P42695 1498 aa18.14■□□□□ 0.49
LIG1-201ENST00000263274 TOP2BQ02880 1626 aa18.14■□□□□ 0.49
LIG1-201ENST00000263274 PRXQ9BXM0 1461 aa18.12■□□□□ 0.49
LIG1-201ENST00000263274 SUPT16HQ9Y5B9 1047 aaKnown RBP18.11■□□□□ 0.49
LIG1-201ENST00000263274 CUX2O14529 1486 aa18.08■□□□□ 0.48
LIG1-201ENST00000263274 RAB3GAP2Q9H2M9 1393 aa18.08■□□□□ 0.48
LIG1-201ENST00000263274 CUX1P39880 1505 aa18.06■□□□□ 0.48
LIG1-201ENST00000263274 BCL11AQ9H165 835 aa18.04■□□□□ 0.48
LIG1-201ENST00000263274 NESP48681 1621 aa18.03■□□□□ 0.48
LIG1-201ENST00000263274 ARHGAP35Q9NRY4 1499 aa18.03■□□□□ 0.48
LIG1-201ENST00000263274 ERICH3Q5RHP9 1530 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms