Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC010525.1-201ENST00000585559 441 ntBASIC18.67■□□□□ 0.58
LMX1BO60663 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.67■□□□□ 0.58
LMX1BO60663 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
LMX1BO60663 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.66■□□□□ 0.58
LMX1BO60663 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.66■□□□□ 0.58
LMX1BO60663 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 AC126544.1-201ENST00000580842 1059 ntBASIC18.66■□□□□ 0.58
LMX1BO60663 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.66■□□□□ 0.58
LMX1BO60663 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LMX1BO60663 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1BO60663 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1BO60663 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LMX1BO60663 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LMX1BO60663 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.65■□□□□ 0.58
LMX1BO60663 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.65■□□□□ 0.58
LMX1BO60663 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.65■□□□□ 0.58
LMX1BO60663 AC090192.1-201ENST00000517740 490 ntBASIC18.65■□□□□ 0.58
LMX1BO60663 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LMX1BO60663 RARRES2P11-201ENST00000635158 484 ntBASIC18.65■□□□□ 0.58
LMX1BO60663 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1BO60663 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1BO60663 OR7E47P-201ENST00000546390 1422 ntBASIC18.65■□□□□ 0.58
LMX1BO60663 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LMX1BO60663 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LMX1BO60663 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
LMX1BO60663 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LMX1BO60663 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
LMX1BO60663 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.64■□□□□ 0.58
LMX1BO60663 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1BO60663 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1BO60663 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
LMX1BO60663 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.64■□□□□ 0.57
LMX1BO60663 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.64■□□□□ 0.57
LMX1BO60663 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
LMX1BO60663 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1BO60663 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1BO60663 AL137784.2-201ENST00000607332 1000 ntBASIC18.64■□□□□ 0.57
LMX1BO60663 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
LMX1BO60663 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1BO60663 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1BO60663 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LMX1BO60663 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.64■□□□□ 0.57
LMX1BO60663 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.64■□□□□ 0.57
LMX1BO60663 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LMX1BO60663 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.63■□□□□ 0.57
LMX1BO60663 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
LMX1BO60663 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.63■□□□□ 0.57
LMX1BO60663 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 AC022517.1-201ENST00000592429 346 ntBASIC18.63■□□□□ 0.57
LMX1BO60663 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.63■□□□□ 0.57
LMX1BO60663 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.63■□□□□ 0.57
LMX1BO60663 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
LMX1BO60663 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LMX1BO60663 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LMX1BO60663 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LMX1BO60663 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.63■□□□□ 0.57
LMX1BO60663 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.62■□□□□ 0.57
LMX1BO60663 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.62■□□□□ 0.57
LMX1BO60663 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.62■□□□□ 0.57
LMX1BO60663 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LMX1BO60663 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.62■□□□□ 0.57
LMX1BO60663 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 FEM1AP4-201ENST00000443167 1987 ntBASIC18.62■□□□□ 0.57
LMX1BO60663 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.62■□□□□ 0.57
LMX1BO60663 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.62■□□□□ 0.57
LMX1BO60663 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1BO60663 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.62■□□□□ 0.57
LMX1BO60663 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms