Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
POLR2J3Q9H1A7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 AP005435.1-201ENST00000529293 1178 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 AC011298.3-201ENST00000615796 283 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 AC136469.2-201ENST00000623944 1028 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 FEM1AP4-201ENST00000443167 1987 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 SYT6-210ENST00000641643 1587 ntBASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
POLR2J3Q9H1A7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.65■□□□□ 0.74
POLR2J3Q9H1A7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
POLR2J3Q9H1A7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 AF106564.1-201ENST00000607058 2553 ntBASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 AL356441.2-201ENST00000443009 864 ntBASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 SLC25A24-204ENST00000569674 2357 ntBASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
POLR2J3Q9H1A7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 SERBP1P1-201ENST00000396021 1160 ntBASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
POLR2J3Q9H1A7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
POLR2J3Q9H1A7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms