Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
ATF4P18848 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 LTB4R2-202ENST00000528054 3092 ntBASIC17.71■□□□□ 0.43
ATF4P18848 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
ATF4P18848 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 AL592293.1-201ENST00000502889 1188 ntBASIC17.71■□□□□ 0.43
ATF4P18848 AC018755.3-202ENST00000596210 929 ntBASIC17.71■□□□□ 0.43
ATF4P18848 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
ATF4P18848 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ATF4P18848 FZD10-202ENST00000539839 3282 ntBASIC17.71■□□□□ 0.42
ATF4P18848 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
ATF4P18848 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
ATF4P18848 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.7■□□□□ 0.42
ATF4P18848 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
ATF4P18848 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ATF4P18848 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
ATF4P18848 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.69■□□□□ 0.42
ATF4P18848 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC17.69■□□□□ 0.42
ATF4P18848 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.69■□□□□ 0.42
ATF4P18848 AC074183.2-201ENST00000623112 922 ntBASIC17.69■□□□□ 0.42
ATF4P18848 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ATF4P18848 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ATF4P18848 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.69■□□□□ 0.42
ATF4P18848 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.68■□□□□ 0.42
ATF4P18848 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 LINC01006-201ENST00000333319 2292 ntBASIC17.68■□□□□ 0.42
ATF4P18848 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.68■□□□□ 0.42
ATF4P18848 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
ATF4P18848 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ATF4P18848 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
ATF4P18848 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
ATF4P18848 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.67■□□□□ 0.42
ATF4P18848 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
ATF4P18848 RPS2P7-201ENST00000447334 885 ntBASIC17.67■□□□□ 0.42
ATF4P18848 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ATF4P18848 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATF4P18848 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.67■□□□□ 0.42
ATF4P18848 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.67■□□□□ 0.42
ATF4P18848 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.67■□□□□ 0.42
ATF4P18848 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ATF4P18848 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATF4P18848 FAM99A-202ENST00000538190 1989 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms