Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 MIR3181-201ENST00000578512 73 ntBASIC20.98■□□□□ 0.95
TRIM13O60858 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM13O60858 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM13O60858 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM13O60858 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TRIM13O60858 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM13O60858 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM13O60858 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM13O60858 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM13O60858 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM13O60858 AC010141.3-201ENST00000456659 717 ntBASIC20.97■□□□□ 0.95
TRIM13O60858 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM13O60858 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TRIM13O60858 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM13O60858 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM13O60858 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM13O60858 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM13O60858 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM13O60858 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.96■□□□□ 0.95
TRIM13O60858 OXCT2P1-201ENST00000447263 1535 ntBASIC20.96■□□□□ 0.95
TRIM13O60858 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM13O60858 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM13O60858 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM13O60858 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM13O60858 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM13O60858 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TRIM13O60858 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM13O60858 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM13O60858 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM13O60858 AL157384.1-201ENST00000445995 2473 ntBASIC20.96■□□□□ 0.95
TRIM13O60858 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
TRIM13O60858 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM13O60858 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM13O60858 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM13O60858 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM13O60858 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 KRT16P3-201ENST00000439127 1283 ntBASIC20.95■□□□□ 0.94
TRIM13O60858 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM13O60858 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM13O60858 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TRIM13O60858 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TRIM13O60858 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
TRIM13O60858 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 AL356740.2-201ENST00000601559 647 ntBASIC20.94■□□□□ 0.94
TRIM13O60858 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM13O60858 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TRIM13O60858 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TRIM13O60858 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
TRIM13O60858 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM13O60858 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.92■□□□□ 0.94
TRIM13O60858 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.92■□□□□ 0.94
TRIM13O60858 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM13O60858 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TRIM13O60858 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM13O60858 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM13O60858 AL034346.1-201ENST00000568244 1277 ntBASIC20.92■□□□□ 0.94
TRIM13O60858 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.92■□□□□ 0.94
TRIM13O60858 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TRIM13O60858 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms