Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGB3O15347 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
HMGB3O15347 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB3O15347 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 MIR639-201ENST00000384974 98 ntBASIC17.16■□□□□ 0.34
HMGB3O15347 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB3O15347 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGB3O15347 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HMGB3O15347 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB3O15347 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGB3O15347 AL121603.2-201ENST00000557373 2117 ntBASIC17.15■□□□□ 0.34
HMGB3O15347 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HMGB3O15347 MIR6765-201ENST00000614092 87 ntBASIC17.15■□□□□ 0.34
HMGB3O15347 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB3O15347 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB3O15347 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
HMGB3O15347 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
HMGB3O15347 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HMGB3O15347 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB3O15347 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
HMGB3O15347 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB3O15347 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB3O15347 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB3O15347 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB3O15347 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
HMGB3O15347 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 LBH-205ENST00000407930 756 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 LONRF2P2-201ENST00000439212 571 ntBASIC17.13■□□□□ 0.33
HMGB3O15347 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGB3O15347 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB3O15347 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB3O15347 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB3O15347 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB3O15347 AC244015.2-201ENST00000616358 1861 ntBASIC17.12■□□□□ 0.33
HMGB3O15347 RNF165-205ENST00000588679 2904 ntBASIC17.12■□□□□ 0.33
HMGB3O15347 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGB3O15347 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
HMGB3O15347 OR6D1P-202ENST00000641007 5290 ntBASIC17.12■□□□□ 0.33
HMGB3O15347 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
HMGB3O15347 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB3O15347 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB3O15347 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB3O15347 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
HMGB3O15347 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB3O15347 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms