Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 AP005435.1-201ENST00000529293 1178 ntBASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 AC011298.3-201ENST00000615796 283 ntBASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 AL034346.1-201ENST00000568244 1277 ntBASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
PCDHA3Q9Y5H8 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.35■■□□□ 1.17
PCDHA3Q9Y5H8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 SLC47A1P1-202ENST00000449666 945 ntBASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHA3Q9Y5H8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
PCDHA3Q9Y5H8 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
PCDHA3Q9Y5H8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHA3Q9Y5H8 AP004607.7-201ENST00000527152 1677 ntBASIC22.33■■□□□ 1.16
PCDHA3Q9Y5H8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHA3Q9Y5H8 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 AC003102.1-202ENST00000563394 1796 ntBASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
PCDHA3Q9Y5H8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 AC131281.2-201ENST00000520478 145 ntBASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHA3Q9Y5H8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHA3Q9Y5H8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms