Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 ANOS2P-203ENST00000472227 1816 ntBASIC27.3■■□□□ 1.96
RC3H1Q5TC82 LINC00526-201ENST00000581067 1875 ntBASIC27.3■■□□□ 1.96
RC3H1Q5TC82 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 RPS2P52-201ENST00000469610 820 ntBASIC27.3■■□□□ 1.96
RC3H1Q5TC82 ADM-205ENST00000528544 586 ntTSL 2 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
RC3H1Q5TC82 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 AC098590.1-201ENST00000468126 897 ntBASIC27.29■■□□□ 1.96
RC3H1Q5TC82 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 AP006587.3-201ENST00000525742 1516 ntBASIC27.29■■□□□ 1.96
RC3H1Q5TC82 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RC3H1Q5TC82 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 BX276092.2-201ENST00000417668 665 ntBASIC27.28■■□□□ 1.96
RC3H1Q5TC82 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 RARRES2P4-201ENST00000514074 484 ntBASIC27.28■■□□□ 1.96
RC3H1Q5TC82 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
RC3H1Q5TC82 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 DUSP5P2-201ENST00000426873 1033 ntBASIC27.27■■□□□ 1.96
RC3H1Q5TC82 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RC3H1Q5TC82 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 RHEB-204ENST00000472642 900 ntTSL 3 BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 AC097658.1-201ENST00000475555 843 ntBASIC27.26■■□□□ 1.95
RC3H1Q5TC82 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.26■■□□□ 1.95
RC3H1Q5TC82 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 GCSHP5-201ENST00000443090 522 ntBASIC27.25■■□□□ 1.95
RC3H1Q5TC82 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 AL162412.1-201ENST00000567129 965 ntBASIC27.25■■□□□ 1.95
RC3H1Q5TC82 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RC3H1Q5TC82 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 ESRRAP1-201ENST00000400596 1257 ntBASIC27.24■■□□□ 1.95
RC3H1Q5TC82 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RC3H1Q5TC82 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 ARL16-209ENST00000573715 763 ntTSL 3 BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 ARL16-211ENST00000576135 694 ntTSL 3 BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RC3H1Q5TC82 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
RC3H1Q5TC82 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms