Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA1Q9Y5I3 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
PCDHA1Q9Y5I3 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 KRT87P-202ENST00000534226 1464 ntBASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 AP006587.3-201ENST00000525742 1516 ntBASIC24.66■■□□□ 1.54
PCDHA1Q9Y5I3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 AL137784.2-201ENST00000607332 1000 ntBASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
PCDHA1Q9Y5I3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 KRT19P1-201ENST00000405746 1186 ntBASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.64■■□□□ 1.54
PCDHA1Q9Y5I3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHA1Q9Y5I3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHA1Q9Y5I3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.64■■□□□ 1.53
PCDHA1Q9Y5I3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.64■■□□□ 1.53
PCDHA1Q9Y5I3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 AC068473.5-201ENST00000616428 2072 ntBASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.63■■□□□ 1.53
PCDHA1Q9Y5I3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA1Q9Y5I3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 AC137761.2-201ENST00000561729 223 ntBASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 AC145350.3-201ENST00000569033 163 ntBASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 AC104187.1-201ENST00000607510 612 ntBASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 AC092053.2-201ENST00000640557 1818 ntBASIC24.61■■□□□ 1.53
PCDHA1Q9Y5I3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms