Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRCH3Q96II8 LINC01529-204ENST00000636474 1715 ntBASIC23.42■■□□□ 1.34
LRCH3Q96II8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRCH3Q96II8 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 FAM197Y4-202ENST00000622692 608 ntBASIC23.42■■□□□ 1.34
LRCH3Q96II8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.42■■□□□ 1.34
LRCH3Q96II8 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRCH3Q96II8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRCH3Q96II8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 AL512625.2-201ENST00000417533 625 ntBASIC23.41■■□□□ 1.34
LRCH3Q96II8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 AC010141.3-201ENST00000456659 717 ntBASIC23.41■■□□□ 1.34
LRCH3Q96II8 TERF1P5-201ENST00000477545 1207 ntBASIC23.41■■□□□ 1.34
LRCH3Q96II8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.41■■□□□ 1.34
LRCH3Q96II8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRCH3Q96II8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.4■■□□□ 1.34
LRCH3Q96II8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.4■■□□□ 1.34
LRCH3Q96II8 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LRCH3Q96II8 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.39■■□□□ 1.34
LRCH3Q96II8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
LRCH3Q96II8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRCH3Q96II8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRCH3Q96II8 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 AC008694.1-202ENST00000636953 945 ntBASIC23.39■■□□□ 1.33
LRCH3Q96II8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRCH3Q96II8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC23.39■■□□□ 1.33
LRCH3Q96II8 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRCH3Q96II8 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.38■■□□□ 1.33
LRCH3Q96II8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRCH3Q96II8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRCH3Q96II8 RCN1P1-201ENST00000400413 996 ntBASIC23.38■■□□□ 1.33
LRCH3Q96II8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRCH3Q96II8 RPPH1-201ENST00000516869 333 ntBASIC23.38■■□□□ 1.33
LRCH3Q96II8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.38■■□□□ 1.33
LRCH3Q96II8 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.38■■□□□ 1.33
LRCH3Q96II8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.38■■□□□ 1.33
LRCH3Q96II8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.38■■□□□ 1.33
LRCH3Q96II8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRCH3Q96II8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRCH3Q96II8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRCH3Q96II8 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRCH3Q96II8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 KRT18P35-201ENST00000510488 1269 ntBASIC23.37■■□□□ 1.33
LRCH3Q96II8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC23.37■■□□□ 1.33
LRCH3Q96II8 AC068587.7-201ENST00000641602 218 ntBASIC23.37■■□□□ 1.33
LRCH3Q96II8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRCH3Q96II8 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC23.36■■□□□ 1.33
LRCH3Q96II8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRCH3Q96II8 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms