Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 AC079089.2-201ENST00000531211 1277 ntBASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 OR10C1-204ENST00000622521 1039 ntBASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC44A3Q8N4M1 ABCB10P4-201ENST00000566803 2184 ntBASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 RPS2P52-201ENST00000469610 820 ntBASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 AP004607.7-201ENST00000527152 1677 ntBASIC22.11■■□□□ 1.13
SLC44A3Q8N4M1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 AL512625.2-201ENST00000417533 625 ntBASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 AC092118.2-201ENST00000613495 667 ntBASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC44A3Q8N4M1 AC020928.2-201ENST00000588717 2197 ntBASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 AC007322.4-201ENST00000509611 723 ntBASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.09■■□□□ 1.13
SLC44A3Q8N4M1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 AC093787.1-201ENST00000450396 207 ntBASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.08■■□□□ 1.13
SLC44A3Q8N4M1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC44A3Q8N4M1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
SLC44A3Q8N4M1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC44A3Q8N4M1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 DUSP5P2-201ENST00000426873 1033 ntBASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 AC008694.1-202ENST00000636953 945 ntBASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
SLC44A3Q8N4M1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms