Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC12.6□□□□□ -0.39
RPS28P62857 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
RPS28P62857 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
RPS28P62857 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.6□□□□□ -0.39
RPS28P62857 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC12.6□□□□□ -0.39
RPS28P62857 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC12.59□□□□□ -0.39
RPS28P62857 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RPS28P62857 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
RPS28P62857 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPS28P62857 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
RPS28P62857 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RPS28P62857 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
RPS28P62857 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
RPS28P62857 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC12.58□□□□□ -0.4
RPS28P62857 AC142472.1-201ENST00000612013 1741 ntBASIC12.58□□□□□ -0.4
RPS28P62857 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
RPS28P62857 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
RPS28P62857 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC12.58□□□□□ -0.4
RPS28P62857 AC046158.3-201ENST00000624947 2558 ntBASIC12.58□□□□□ -0.4
RPS28P62857 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC12.58□□□□□ -0.4
RPS28P62857 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RPS28P62857 ANOS2P-203ENST00000472227 1816 ntBASIC12.58□□□□□ -0.4
RPS28P62857 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC12.57□□□□□ -0.4
RPS28P62857 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC12.57□□□□□ -0.4
RPS28P62857 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC12.57□□□□□ -0.4
RPS28P62857 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC12.57□□□□□ -0.4
RPS28P62857 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
RPS28P62857 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC12.57□□□□□ -0.4
RPS28P62857 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC12.57□□□□□ -0.4
RPS28P62857 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RPS28P62857 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC12.56□□□□□ -0.4
RPS28P62857 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC12.56□□□□□ -0.4
RPS28P62857 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
RPS28P62857 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RPS28P62857 AC092068.2-201ENST00000590491 1708 ntBASIC12.56□□□□□ -0.4
RPS28P62857 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
RPS28P62857 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC12.56□□□□□ -0.4
RPS28P62857 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms