Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A11P48066 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.92■■□□□ 1.1
SLC6A11P48066 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.92■■□□□ 1.1
SLC6A11P48066 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
SLC6A11P48066 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
SLC6A11P48066 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A11P48066 AC087742.1-201ENST00000575880 1738 ntBASIC21.92■■□□□ 1.1
SLC6A11P48066 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.91■■□□□ 1.1
SLC6A11P48066 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
SLC6A11P48066 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SLC6A11P48066 AC007322.1-201ENST00000426983 750 ntBASIC21.91■■□□□ 1.1
SLC6A11P48066 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.91■■□□□ 1.1
SLC6A11P48066 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.91■■□□□ 1.1
SLC6A11P48066 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.91■■□□□ 1.1
SLC6A11P48066 AC231657.2-201ENST00000624556 255 ntBASIC21.91■■□□□ 1.1
SLC6A11P48066 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.91■■□□□ 1.1
SLC6A11P48066 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A11P48066 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.9■■□□□ 1.1
SLC6A11P48066 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.9■■□□□ 1.1
SLC6A11P48066 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.9■■□□□ 1.1
SLC6A11P48066 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.9■■□□□ 1.1
SLC6A11P48066 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SLC6A11P48066 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 AC137767.1-201ENST00000602918 1920 ntBASIC21.9■■□□□ 1.1
SLC6A11P48066 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A11P48066 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
SLC6A11P48066 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A11P48066 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A11P48066 AC010141.2-201ENST00000452426 721 ntBASIC21.89■■□□□ 1.09
SLC6A11P48066 AC083906.2-201ENST00000511578 360 ntBASIC21.89■■□□□ 1.09
SLC6A11P48066 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC6A11P48066 AC138907.5-202ENST00000569484 235 ntBASIC21.89■■□□□ 1.09
SLC6A11P48066 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.89■■□□□ 1.09
SLC6A11P48066 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.89■■□□□ 1.09
SLC6A11P48066 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.89■■□□□ 1.09
SLC6A11P48066 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A11P48066 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A11P48066 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.89■■□□□ 1.09
SLC6A11P48066 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.88■■□□□ 1.09
SLC6A11P48066 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.88■■□□□ 1.09
SLC6A11P48066 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.88■■□□□ 1.09
SLC6A11P48066 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.88■■□□□ 1.09
SLC6A11P48066 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 AC005181.1-201ENST00000604782 1256 ntBASIC21.88■■□□□ 1.09
SLC6A11P48066 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.88■■□□□ 1.09
SLC6A11P48066 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A11P48066 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.87■■□□□ 1.09
SLC6A11P48066 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.87■■□□□ 1.09
SLC6A11P48066 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 AL034346.1-201ENST00000568244 1277 ntBASIC21.87■■□□□ 1.09
SLC6A11P48066 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.87■■□□□ 1.09
SLC6A11P48066 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.87■■□□□ 1.09
SLC6A11P48066 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.87■■□□□ 1.09
SLC6A11P48066 AL121832.2-201ENST00000610979 668 ntBASIC21.87■■□□□ 1.09
SLC6A11P48066 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.87■■□□□ 1.09
SLC6A11P48066 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.87■■□□□ 1.09
SLC6A11P48066 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A11P48066 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.87■■□□□ 1.09
SLC6A11P48066 AP006587.3-201ENST00000525742 1516 ntBASIC21.86■■□□□ 1.09
SLC6A11P48066 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.86■■□□□ 1.09
SLC6A11P48066 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A11P48066 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms