Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCNFP41002 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.56■■□□□ 1.04
CCNFP41002 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.56■■□□□ 1.04
CCNFP41002 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCNFP41002 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.56■■□□□ 1.04
CCNFP41002 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNFP41002 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.56■■□□□ 1.04
CCNFP41002 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCNFP41002 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNFP41002 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCNFP41002 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.55■■□□□ 1.04
CCNFP41002 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNFP41002 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNFP41002 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.54■■□□□ 1.04
CCNFP41002 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CCNFP41002 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.54■■□□□ 1.04
CCNFP41002 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CCNFP41002 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.54■■□□□ 1.04
CCNFP41002 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CCNFP41002 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNFP41002 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNFP41002 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNFP41002 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNFP41002 UNC93B3-201ENST00000308076 687 ntBASIC21.53■■□□□ 1.04
CCNFP41002 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.53■■□□□ 1.04
CCNFP41002 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.53■■□□□ 1.04
CCNFP41002 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.53■■□□□ 1.04
CCNFP41002 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.53■■□□□ 1.04
CCNFP41002 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CCNFP41002 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CCNFP41002 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNFP41002 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.53■■□□□ 1.04
CCNFP41002 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
CCNFP41002 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.52■■□□□ 1.04
CCNFP41002 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CCNFP41002 AC136469.2-201ENST00000623944 1028 ntBASIC21.52■■□□□ 1.04
CCNFP41002 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CCNFP41002 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNFP41002 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.52■■□□□ 1.04
CCNFP41002 FEM1AP4-201ENST00000443167 1987 ntBASIC21.52■■□□□ 1.04
CCNFP41002 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCNFP41002 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.51■■□□□ 1.03
CCNFP41002 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CCNFP41002 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.51■■□□□ 1.03
CCNFP41002 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.51■■□□□ 1.03
CCNFP41002 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCNFP41002 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCNFP41002 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.5■■□□□ 1.03
CCNFP41002 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.5■■□□□ 1.03
CCNFP41002 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 AC096631.2-201ENST00000436136 790 ntBASIC21.5■■□□□ 1.03
CCNFP41002 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.5■■□□□ 1.03
CCNFP41002 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.5■■□□□ 1.03
CCNFP41002 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 AL031602.1-201ENST00000633169 911 ntBASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms