Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SNX5-207ENST00000474883 695 ntTSL 53.25□□□□□ -1.893e-16■□□□□ 10.6
CDC40O60508 NPM1-209ENST00000521710 386 ntTSL 21.54□□□□□ -2.161e-8■□□□□ 10.6
CDC40O60508 ATXN1-209ENST00000495178 853 ntTSL 1 (best)1.37□□□□□ -2.192e-6■□□□□ 10.6
CDC40O60508 SETD5-228ENST00000493918 4861 ntTSL 1 (best)6.46□□□□□ -1.374e-13■□□□□ 10.5
CDC40O60508 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.74□□□□□ -0.051e-9■□□□□ 10.5
CDC40O60508 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.542e-7■□□□□ 10.5
CDC40O60508 SYNJ2-201ENST00000355585 7378 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.662e-7■□□□□ 10.5
CDC40O60508 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC10.15□□□□□ -0.782e-7■□□□□ 10.5
CDC40O60508 BMP4-202ENST00000417573 1784 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.631e-7■□□□□ 10.4
CDC40O60508 GSE1-216ENST00000637419 2683 ntTSL 518.07■□□□□ 0.482e-6■□□□□ 10.4
CDC40O60508 PRRC2B-205ENST00000451855 1762 ntTSL 519.67■□□□□ 0.747e-9■□□□□ 10.4
CDC40O60508 APP-215ENST00000474136 1309 ntTSL 1 (best)18.89■□□□□ 0.617e-9■□□□□ 10.4
CDC40O60508 PTTG1IP-206ENST00000480234 398 ntTSL 318.75■□□□□ 0.591e-8■□□□□ 10.4
CDC40O60508 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.84■□□□□ 0.291e-8■□□□□ 10.4
CDC40O60508 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.8■□□□□ 0.281e-8■□□□□ 10.4
CDC40O60508 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.68■□□□□ 0.267e-9■□□□□ 10.4
CDC40O60508 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.211e-8■□□□□ 10.4
CDC40O60508 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.27e-9■□□□□ 10.4
CDC40O60508 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.23■□□□□ 0.197e-9■□□□□ 10.4
CDC40O60508 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.037e-9■□□□□ 10.4
CDC40O60508 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.86□□□□□ -0.197e-9■□□□□ 10.4
CDC40O60508 APP-210ENST00000448850 1846 ntTSL 1 (best)13.25□□□□□ -0.297e-9■□□□□ 10.4
CDC40O60508 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.07□□□□□ -0.327e-9■□□□□ 10.4
CDC40O60508 ENO1-202ENST00000464920 2266 ntTSL 1 (best)11.93□□□□□ -0.57e-9■□□□□ 10.4
CDC40O60508 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.577e-9■□□□□ 10.4
CDC40O60508 ENO1-206ENST00000497492 647 ntTSL 211.38□□□□□ -0.597e-9■□□□□ 10.4
CDC40O60508 PTTG1IP-207ENST00000494690 612 ntTSL 511.22□□□□□ -0.611e-8■□□□□ 10.4
CDC40O60508 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC11.05□□□□□ -0.647e-9■□□□□ 10.4
CDC40O60508 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.667e-9■□□□□ 10.4
CDC40O60508 APP-201ENST00000346798 3467 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.77e-9■□□□□ 10.4
CDC40O60508 APP-212ENST00000463070 582 ntTSL 27.96□□□□□ -1.147e-9■□□□□ 10.4
CDC40O60508 APP-216ENST00000491395 619 ntTSL 27.7□□□□□ -1.187e-9■□□□□ 10.4
CDC40O60508 APP-209ENST00000440126 2846 ntTSL 2 BASIC7.21□□□□□ -1.267e-9■□□□□ 10.4
CDC40O60508 APP-206ENST00000359726 3294 ntTSL 2 BASIC6.74□□□□□ -1.337e-9■□□□□ 10.4
CDC40O60508 ENO1-203ENST00000486051 536 ntTSL 35.79□□□□□ -1.487e-9■□□□□ 10.4
CDC40O60508 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.847e-9■□□□□ 10.4
CDC40O60508 APP-207ENST00000415997 541 ntTSL 32.73□□□□□ -1.977e-9■□□□□ 10.4
CDC40O60508 JMJD1C-203ENST00000402544 8011 ntTSL 1 (best)2.71□□□□□ -1.987e-9■□□□□ 10.4
CDC40O60508 JMJD1C-201ENST00000327520 3781 ntTSL 21.6□□□□□ -2.157e-9■□□□□ 10.4
CDC40O60508 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.15□□□□□ -2.227e-9■□□□□ 10.4
CDC40O60508 ASPSCR1-204ENST00000577733 5503 ntTSL 216.41■□□□□ 0.224e-10■□□□□ 10.4
CDC40O60508 LUC7L-219ENST00000494545 725 ntTSL 520.85■□□□□ 0.932e-12■□□□□ 10.4
CDC40O60508 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)17.87■□□□□ 0.452e-12■□□□□ 10.4
CDC40O60508 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.272e-12■□□□□ 10.4
CDC40O60508 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.69■□□□□ 0.262e-12■□□□□ 10.4
CDC40O60508 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.18■□□□□ 0.182e-12■□□□□ 10.4
CDC40O60508 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.14■□□□□ 0.172e-12■□□□□ 10.4
CDC40O60508 LUC7L-217ENST00000490762 2643 ntTSL 1 (best)12.6□□□□□ -0.392e-12■□□□□ 10.4
CDC40O60508 LUC7L-206ENST00000419516 1211 ntTSL 512.5□□□□□ -0.412e-12■□□□□ 10.4
CDC40O60508 LUC7L-205ENST00000418978 989 ntTSL 511.14□□□□□ -0.632e-12■□□□□ 10.4
CDC40O60508 LUC7L-210ENST00000430864 695 ntTSL 511□□□□□ -0.652e-12■□□□□ 10.4
CDC40O60508 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.526e-8■□□□□ 10.4
CDC40O60508 C20orf204-202ENST00000431158 2954 ntTSL 1 (best)15.26■□□□□ 0.036e-8■□□□□ 10.4
CDC40O60508 C20orf204-203ENST00000444463 4303 ntTSL 1 (best)14.86□□□□□ -0.036e-8■□□□□ 10.4
CDC40O60508 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.054e-7■□□□□ 10.4
CDC40O60508 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.98□□□□□ -0.014e-7■□□□□ 10.4
CDC40O60508 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.92e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-204ENST00000449879 580 ntTSL 315.45■□□□□ 0.062e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-206ENST00000452814 804 ntTSL 514.58□□□□□ -0.082e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-202ENST00000412256 558 ntTSL 213.03□□□□□ -0.322e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 511.37□□□□□ -0.592e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC10.88□□□□□ -0.672e-6■□□□□ 10.4
CDC40O60508 RAB11FIP3-211ENST00000495663 529 ntTSL 29.15□□□□□ -0.942e-6■□□□□ 10.4
CDC40O60508 TRIM24-203ENST00000464210 545 ntTSL 45.06□□□□□ -1.61e-27■□□□□ 10.3
CDC40O60508 IER3-202ENST00000376377 1350 ntBASIC17.07■□□□□ 0.324e-7■□□□□ 10.3
CDC40O60508 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.294e-7■□□□□ 10.3
CDC40O60508 NFE2L2-205ENST00000430047 451 ntTSL 321.5■■□□□ 1.031e-15■□□□□ 10.3
CDC40O60508 NFE2L2-210ENST00000462023 521 ntTSL 214.46□□□□□ -0.091e-15■□□□□ 10.3
CDC40O60508 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.11□□□□□ -0.151e-15■□□□□ 10.3
CDC40O60508 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC10.13□□□□□ -0.791e-15■□□□□ 10.3
CDC40O60508 NFE2L2-214ENST00000588123 814 ntTSL 58.65□□□□□ -1.021e-15■□□□□ 10.3
CDC40O60508 NFE2L2-213ENST00000586532 942 ntTSL 52.68□□□□□ -1.981e-15■□□□□ 10.3
CDC40O60508 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.519e-7■□□□□ 10.3
CDC40O60508 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.459e-7■□□□□ 10.3
CDC40O60508 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.28□□□□□ -0.281e-10■□□□□ 10.3
CDC40O60508 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC10.27□□□□□ -0.771e-10■□□□□ 10.3
CDC40O60508 GAS5-224ENST00000454068 688 ntTSL 5 BASIC8.97□□□□□ -0.971e-10■□□□□ 10.3
CDC40O60508 GAS5-214ENST00000436656 822 ntTSL 38.73□□□□□ -1.011e-10■□□□□ 10.3
CDC40O60508 GAS5-216ENST00000443799 897 ntTSL 58.73□□□□□ -1.011e-10■□□□□ 10.3
CDC40O60508 GAS5-203ENST00000416952 799 ntTSL 28.11□□□□□ -1.111e-10■□□□□ 10.3
CDC40O60508 GAS5-210ENST00000431268 1698 ntTSL 28.09□□□□□ -1.111e-10■□□□□ 10.3
CDC40O60508 GAS5-219ENST00000449289 542 ntTSL 3 BASIC7.5□□□□□ -1.211e-10■□□□□ 10.3
CDC40O60508 GAS5-220ENST00000449589 712 ntTSL 37.5□□□□□ -1.211e-10■□□□□ 10.3
CDC40O60508 GAS5-226ENST00000455838 632 ntTSL 27.5□□□□□ -1.211e-10■□□□□ 10.3
CDC40O60508 GAS5-211ENST00000432536 959 ntTSL 2 BASIC6.72□□□□□ -1.331e-10■□□□□ 10.3
CDC40O60508 GAS5-227ENST00000456293 583 ntTSL 36.62□□□□□ -1.351e-10■□□□□ 10.3
CDC40O60508 GAS5-228ENST00000456812 723 ntTSL 36.31□□□□□ -1.41e-10■□□□□ 10.3
CDC40O60508 GAS5-206ENST00000422183 745 ntTSL 25.64□□□□□ -1.511e-10■□□□□ 10.3
CDC40O60508 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.44□□□□□ -1.541e-10■□□□□ 10.3
CDC40O60508 GAS5-201ENST00000412059 979 ntTSL 55.14□□□□□ -1.591e-10■□□□□ 10.3
CDC40O60508 GAS5-205ENST00000422008 497 ntTSL 34.37□□□□□ -1.711e-10■□□□□ 10.3
CDC40O60508 GAS5-215ENST00000442067 1114 ntTSL 24.17□□□□□ -1.741e-10■□□□□ 10.3
CDC40O60508 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.1□□□□□ -1.751e-10■□□□□ 10.3
CDC40O60508 GAS5-204ENST00000421068 1060 ntTSL 24□□□□□ -1.771e-10■□□□□ 10.3
CDC40O60508 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.67□□□□□ -1.821e-10■□□□□ 10.3
CDC40O60508 GAS5-213ENST00000436285 772 ntTSL 23.28□□□□□ -1.881e-10■□□□□ 10.3
CDC40O60508 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.3□□□□□ -2.041e-10■□□□□ 10.3
CDC40O60508 SLC16A3-210ENST00000580189 872 ntTSL 517.58■□□□□ 0.43e-10■□□□□ 10.2
CDC40O60508 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.373e-10■□□□□ 10.2
CDC40O60508 SLC16A3-204ENST00000578522 535 ntTSL 415.32■□□□□ 0.043e-10■□□□□ 10.2
Retrieved 100 of 5,364 protein–RNA pairs in 30 ms