Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
UPK1AO00322 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.38■□□□□ 0.85
UPK1AO00322 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK1AO00322 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
UPK1AO00322 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK1AO00322 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.37■□□□□ 0.85
UPK1AO00322 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.37■□□□□ 0.85
UPK1AO00322 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.37■□□□□ 0.85
UPK1AO00322 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
UPK1AO00322 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
UPK1AO00322 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
UPK1AO00322 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 AC244015.2-201ENST00000616358 1861 ntBASIC20.36■□□□□ 0.85
UPK1AO00322 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.36■□□□□ 0.85
UPK1AO00322 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UPK1AO00322 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
UPK1AO00322 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
UPK1AO00322 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.35■□□□□ 0.85
UPK1AO00322 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.35■□□□□ 0.85
UPK1AO00322 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 AC068587.7-201ENST00000641602 218 ntBASIC20.35■□□□□ 0.85
UPK1AO00322 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.35■□□□□ 0.85
UPK1AO00322 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
UPK1AO00322 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
UPK1AO00322 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
UPK1AO00322 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
UPK1AO00322 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.34■□□□□ 0.85
UPK1AO00322 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.34■□□□□ 0.85
UPK1AO00322 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.34■□□□□ 0.85
UPK1AO00322 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
UPK1AO00322 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
UPK1AO00322 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
UPK1AO00322 SLC47A1P1-202ENST00000449666 945 ntBASIC20.33■□□□□ 0.85
UPK1AO00322 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.33■□□□□ 0.85
UPK1AO00322 AC024257.2-201ENST00000549699 147 ntBASIC20.33■□□□□ 0.85
UPK1AO00322 AL136162.1-201ENST00000607711 1078 ntBASIC20.33■□□□□ 0.85
UPK1AO00322 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UPK1AO00322 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
UPK1AO00322 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UPK1AO00322 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UPK1AO00322 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UPK1AO00322 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.32■□□□□ 0.84
UPK1AO00322 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 MIR4767-201ENST00000582827 78 ntBASIC20.32■□□□□ 0.84
UPK1AO00322 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.32■□□□□ 0.84
UPK1AO00322 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UPK1AO00322 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms