Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 AC011298.3-201ENST00000615796 283 ntBASIC17.4■□□□□ 0.38
FOXA2Q9Y261 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXA2Q9Y261 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 AL136162.1-201ENST00000607711 1078 ntBASIC17.39■□□□□ 0.37
FOXA2Q9Y261 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA2Q9Y261 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 AC133637.1-201ENST00000624115 1537 ntBASIC17.38■□□□□ 0.37
FOXA2Q9Y261 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
FOXA2Q9Y261 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 AC136469.2-201ENST00000623944 1028 ntBASIC17.37■□□□□ 0.37
FOXA2Q9Y261 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 AL031602.1-201ENST00000633169 911 ntBASIC17.37■□□□□ 0.37
FOXA2Q9Y261 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 AC135279.3-201ENST00000610945 1311 ntBASIC17.37■□□□□ 0.37
FOXA2Q9Y261 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXA2Q9Y261 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA2Q9Y261 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 PBX2P1-201ENST00000493219 1291 ntBASIC17.35■□□□□ 0.37
FOXA2Q9Y261 AC024257.2-201ENST00000549699 147 ntBASIC17.35■□□□□ 0.37
FOXA2Q9Y261 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms