Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 MIR4767-201ENST00000582827 78 ntBASIC22.24■■□□□ 1.15
PCDH9Q9HC56 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCDH9Q9HC56 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 AL139246.5-201ENST00000606645 996 ntBASIC22.23■■□□□ 1.15
PCDH9Q9HC56 AC106739.1-201ENST00000617035 715 ntBASIC22.23■■□□□ 1.15
PCDH9Q9HC56 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDH9Q9HC56 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDH9Q9HC56 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 OR2I1P-207ENST00000453522 948 ntBASIC22.21■■□□□ 1.15
PCDH9Q9HC56 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 AC079089.2-201ENST00000531211 1277 ntBASIC22.21■■□□□ 1.15
PCDH9Q9HC56 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDH9Q9HC56 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.2■■□□□ 1.15
PCDH9Q9HC56 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDH9Q9HC56 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PCDH9Q9HC56 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms