Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.02■■□□□ 1.44
NKX3-2P78367 AC013268.1-206ENST00000638368 961 ntBASIC24.02■■□□□ 1.44
NKX3-2P78367 AC112229.1-201ENST00000639295 961 ntBASIC24.02■■□□□ 1.44
NKX3-2P78367 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.01■■□□□ 1.43
NKX3-2P78367 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NKX3-2P78367 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NKX3-2P78367 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NKX3-2P78367 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
NKX3-2P78367 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.01■■□□□ 1.43
NKX3-2P78367 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.01■■□□□ 1.43
NKX3-2P78367 MIR4651-201ENST00000582622 73 ntBASIC24.01■■□□□ 1.43
NKX3-2P78367 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC24.01■■□□□ 1.43
NKX3-2P78367 AP004607.7-201ENST00000527152 1677 ntBASIC24.01■■□□□ 1.43
NKX3-2P78367 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
NKX3-2P78367 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
NKX3-2P78367 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
NKX3-2P78367 TERF1P5-201ENST00000477545 1207 ntBASIC24■■□□□ 1.43
NKX3-2P78367 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC24■■□□□ 1.43
NKX3-2P78367 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24■■□□□ 1.43
NKX3-2P78367 AC053503.5-201ENST00000601508 636 ntBASIC24■■□□□ 1.43
NKX3-2P78367 MARS-234ENST00000630571 216 ntTSL 5 BASIC24■■□□□ 1.43
NKX3-2P78367 MARS-235ENST00000630803 183 ntTSL 3 BASIC24■■□□□ 1.43
NKX3-2P78367 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NKX3-2P78367 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NKX3-2P78367 LINC01960-201ENST00000563759 1884 ntBASIC24■■□□□ 1.43
NKX3-2P78367 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.99■■□□□ 1.43
NKX3-2P78367 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.99■■□□□ 1.43
NKX3-2P78367 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NKX3-2P78367 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.99■■□□□ 1.43
NKX3-2P78367 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
NKX3-2P78367 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.99■■□□□ 1.43
NKX3-2P78367 AL034346.1-201ENST00000568244 1277 ntBASIC23.99■■□□□ 1.43
NKX3-2P78367 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.99■■□□□ 1.43
NKX3-2P78367 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.99■■□□□ 1.43
NKX3-2P78367 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NKX3-2P78367 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.99■■□□□ 1.43
NKX3-2P78367 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NKX3-2P78367 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NKX3-2P78367 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NKX3-2P78367 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.99■■□□□ 1.43
NKX3-2P78367 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.98■■□□□ 1.43
NKX3-2P78367 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NKX3-2P78367 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NKX3-2P78367 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.98■■□□□ 1.43
NKX3-2P78367 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NKX3-2P78367 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.98■■□□□ 1.43
NKX3-2P78367 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NKX3-2P78367 AC068338.2-201ENST00000563278 1430 ntBASIC23.98■■□□□ 1.43
NKX3-2P78367 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NKX3-2P78367 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.97■■□□□ 1.43
NKX3-2P78367 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX3-2P78367 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.97■■□□□ 1.43
NKX3-2P78367 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.97■■□□□ 1.43
NKX3-2P78367 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.97■■□□□ 1.43
NKX3-2P78367 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
NKX3-2P78367 AC098934.4-201ENST00000564127 592 ntBASIC23.97■■□□□ 1.43
NKX3-2P78367 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
NKX3-2P78367 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX3-2P78367 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.96■■□□□ 1.43
NKX3-2P78367 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.96■■□□□ 1.43
NKX3-2P78367 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
NKX3-2P78367 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX3-2P78367 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
NKX3-2P78367 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.96■■□□□ 1.43
NKX3-2P78367 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
NKX3-2P78367 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX3-2P78367 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX3-2P78367 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
NKX3-2P78367 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.43
NKX3-2P78367 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.95■■□□□ 1.42
NKX3-2P78367 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.95■■□□□ 1.42
NKX3-2P78367 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.95■■□□□ 1.42
NKX3-2P78367 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX3-2P78367 MIR4758-201ENST00000577688 71 ntBASIC23.95■■□□□ 1.42
NKX3-2P78367 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.95■■□□□ 1.42
NKX3-2P78367 LINC00526-201ENST00000581067 1875 ntBASIC23.95■■□□□ 1.42
NKX3-2P78367 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX3-2P78367 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NKX3-2P78367 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.95■■□□□ 1.42
NKX3-2P78367 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX3-2P78367 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NKX3-2P78367 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX3-2P78367 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX3-2P78367 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.94■■□□□ 1.42
NKX3-2P78367 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX3-2P78367 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX3-2P78367 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.94■■□□□ 1.42
NKX3-2P78367 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.94■■□□□ 1.42
NKX3-2P78367 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.94■■□□□ 1.42
NKX3-2P78367 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.94■■□□□ 1.42
NKX3-2P78367 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
NKX3-2P78367 OR7E47P-201ENST00000546390 1422 ntBASIC23.93■■□□□ 1.42
NKX3-2P78367 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms