Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NR1H2P55055 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.28■□□□□ 0.84
NR1H2P55055 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.28■□□□□ 0.84
NR1H2P55055 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NR1H2P55055 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NR1H2P55055 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.28■□□□□ 0.84
NR1H2P55055 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.27■□□□□ 0.84
NR1H2P55055 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 AC090877.2-201ENST00000558441 1738 ntBASIC20.27■□□□□ 0.84
NR1H2P55055 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.27■□□□□ 0.84
NR1H2P55055 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NR1H2P55055 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.27■□□□□ 0.84
NR1H2P55055 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 AL117332.1-201ENST00000622628 974 ntBASIC20.27■□□□□ 0.84
NR1H2P55055 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NR1H2P55055 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NR1H2P55055 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.27■□□□□ 0.83
NR1H2P55055 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NR1H2P55055 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
NR1H2P55055 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
NR1H2P55055 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H2P55055 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H2P55055 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H2P55055 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NR1H2P55055 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.26■□□□□ 0.83
NR1H2P55055 MIR3621-201ENST00000580529 85 ntBASIC20.26■□□□□ 0.83
NR1H2P55055 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H2P55055 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H2P55055 AC244015.2-201ENST00000616358 1861 ntBASIC20.26■□□□□ 0.83
NR1H2P55055 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 AF131216.4-201ENST00000638924 1588 ntBASIC20.25■□□□□ 0.83
NR1H2P55055 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.25■□□□□ 0.83
NR1H2P55055 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.25■□□□□ 0.83
NR1H2P55055 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.25■□□□□ 0.83
NR1H2P55055 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H2P55055 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NR1H2P55055 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H2P55055 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.24■□□□□ 0.83
NR1H2P55055 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.24■□□□□ 0.83
NR1H2P55055 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.24■□□□□ 0.83
NR1H2P55055 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
NR1H2P55055 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.24■□□□□ 0.83
NR1H2P55055 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.24■□□□□ 0.83
NR1H2P55055 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H2P55055 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.24■□□□□ 0.83
NR1H2P55055 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.23■□□□□ 0.83
NR1H2P55055 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.23■□□□□ 0.83
NR1H2P55055 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.23■□□□□ 0.83
NR1H2P55055 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 AC131281.2-201ENST00000520478 145 ntBASIC20.23■□□□□ 0.83
NR1H2P55055 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.23■□□□□ 0.83
NR1H2P55055 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H2P55055 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H2P55055 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
NR1H2P55055 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H2P55055 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.22■□□□□ 0.83
NR1H2P55055 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
NR1H2P55055 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
NR1H2P55055 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H2P55055 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H2P55055 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H2P55055 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms