Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A5P29400 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A5P29400 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC26.24■■□□□ 1.79
COL4A5P29400 AC007322.4-201ENST00000509611 723 ntBASIC26.24■■□□□ 1.79
COL4A5P29400 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC26.24■■□□□ 1.79
COL4A5P29400 AC016405.3-201ENST00000607710 860 ntBASIC26.24■■□□□ 1.79
COL4A5P29400 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
COL4A5P29400 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.24■■□□□ 1.79
COL4A5P29400 LINC01124-201ENST00000409786 2117 ntBASIC26.23■■□□□ 1.79
COL4A5P29400 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A5P29400 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC26.23■■□□□ 1.79
COL4A5P29400 AC092118.2-201ENST00000613495 667 ntBASIC26.23■■□□□ 1.79
COL4A5P29400 MYC-209ENST00000641252 345 ntBASIC26.23■■□□□ 1.79
COL4A5P29400 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC26.23■■□□□ 1.79
COL4A5P29400 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A5P29400 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A5P29400 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A5P29400 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A5P29400 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A5P29400 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL4A5P29400 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A5P29400 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
COL4A5P29400 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
COL4A5P29400 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.22■■□□□ 1.79
COL4A5P29400 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.22■■□□□ 1.79
COL4A5P29400 GCSHP5-201ENST00000443090 522 ntBASIC26.22■■□□□ 1.79
COL4A5P29400 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.22■■□□□ 1.79
COL4A5P29400 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.22■■□□□ 1.79
COL4A5P29400 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.22■■□□□ 1.79
COL4A5P29400 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A5P29400 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A5P29400 DUSP5P2-201ENST00000426873 1033 ntBASIC26.22■■□□□ 1.79
COL4A5P29400 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC26.22■■□□□ 1.79
COL4A5P29400 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.22■■□□□ 1.79
COL4A5P29400 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC26.21■■□□□ 1.79
COL4A5P29400 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
COL4A5P29400 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
COL4A5P29400 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.21■■□□□ 1.79
COL4A5P29400 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
COL4A5P29400 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC26.21■■□□□ 1.79
COL4A5P29400 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.21■■□□□ 1.79
COL4A5P29400 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.21■■□□□ 1.79
COL4A5P29400 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.21■■□□□ 1.79
COL4A5P29400 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.21■■□□□ 1.79
COL4A5P29400 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
COL4A5P29400 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A5P29400 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
COL4A5P29400 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.2■■□□□ 1.78
COL4A5P29400 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A5P29400 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A5P29400 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
COL4A5P29400 TERF1P5-201ENST00000477545 1207 ntBASIC26.2■■□□□ 1.78
COL4A5P29400 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A5P29400 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A5P29400 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC26.19■■□□□ 1.78
COL4A5P29400 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A5P29400 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC26.19■■□□□ 1.78
COL4A5P29400 EEF1DP3-203ENST00000566025 782 ntBASIC26.19■■□□□ 1.78
COL4A5P29400 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.18■■□□□ 1.78
COL4A5P29400 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A5P29400 AC020928.2-201ENST00000588717 2197 ntBASIC26.18■■□□□ 1.78
COL4A5P29400 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.18■■□□□ 1.78
COL4A5P29400 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A5P29400 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A5P29400 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A5P29400 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A5P29400 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC26.18■■□□□ 1.78
COL4A5P29400 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.18■■□□□ 1.78
COL4A5P29400 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A5P29400 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A5P29400 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A5P29400 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A5P29400 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.17■■□□□ 1.78
COL4A5P29400 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
COL4A5P29400 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.17■■□□□ 1.78
COL4A5P29400 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC26.17■■□□□ 1.78
COL4A5P29400 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.17■■□□□ 1.78
COL4A5P29400 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
COL4A5P29400 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A5P29400 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A5P29400 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.16■■□□□ 1.78
COL4A5P29400 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A5P29400 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.16■■□□□ 1.78
COL4A5P29400 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.16■■□□□ 1.78
COL4A5P29400 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms