Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MED17-216ENST00000638790 1885 ntTSL 527.12■■□□□ 1.935e-6■■■□□ 19.1
YBX3P16989 PIGX-203ENST00000415832 1677 ntTSL 227■■□□□ 1.915e-6■■■□□ 19.1
YBX3P16989 MFSD1-218ENST00000491804 312 ntTSL 526.32■■□□□ 1.85e-6■■■□□ 19.1
YBX3P16989 ZNF451-216ENST00000510483 719 ntTSL 426.07■■□□□ 1.765e-6■■■□□ 19.1
YBX3P16989 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.59■■□□□ 1.695e-6■■■□□ 19.1
YBX3P16989 ZNF451-209ENST00000502749 790 ntTSL 525.45■■□□□ 1.665e-6■■■□□ 19.1
YBX3P16989 MFSD1-208ENST00000471266 560 ntTSL 425.15■■□□□ 1.625e-6■■■□□ 19.1
YBX3P16989 MFSD1-216ENST00000486568 566 ntTSL 425.03■■□□□ 1.65e-6■■■□□ 19.1
YBX3P16989 ALDH9A1-204ENST00000471457 568 ntTSL 223.88■■□□□ 1.415e-6■■■□□ 19.1
YBX3P16989 MLLT6-209ENST00000620482 1556 ntTSL 1 (best)23.78■■□□□ 1.45e-6■■■□□ 19.1
YBX3P16989 MED17-220ENST00000639596 2108 ntTSL 523.59■■□□□ 1.375e-6■■■□□ 19.1
YBX3P16989 G6PD-209ENST00000490651 783 ntTSL 223.22■■□□□ 1.315e-6■■■□□ 19.1
YBX3P16989 MED17-209ENST00000533133 2370 ntTSL 523■■□□□ 1.275e-6■■■□□ 19.1
YBX3P16989 MED17-207ENST00000530819 2278 ntTSL 222.84■■□□□ 1.255e-6■■■□□ 19.1
YBX3P16989 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.12■■□□□ 1.135e-6■■■□□ 19.1
YBX3P16989 SPG21-211ENST00000560564 607 ntTSL 421.72■■□□□ 1.075e-6■■■□□ 19.1
YBX3P16989 BCL2L12-209ENST00000601168 416 ntTSL 221.47■■□□□ 1.035e-6■■■□□ 19.1
YBX3P16989 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.915e-6■■■□□ 19.1
YBX3P16989 AREL1-210ENST00000555249 581 ntTSL 320.63■□□□□ 0.895e-6■■■□□ 19.1
YBX3P16989 MED17-229ENST00000640804 2627 ntTSL 520.42■□□□□ 0.865e-6■■■□□ 19.1
YBX3P16989 PLSCR1-208ENST00000472349 1198 ntTSL 520.32■□□□□ 0.845e-6■■■□□ 19.1
YBX3P16989 SPG21-204ENST00000557795 747 ntTSL 520.28■□□□□ 0.845e-6■■■□□ 19.1
YBX3P16989 MED17-203ENST00000525026 2621 ntTSL 520.11■□□□□ 0.815e-6■■■□□ 19.1
YBX3P16989 MLLT6-207ENST00000618652 624 ntTSL 320.01■□□□□ 0.795e-6■■■□□ 19.1
YBX3P16989 PLSCR1-205ENST00000468985 983 ntTSL 519.49■□□□□ 0.715e-6■■■□□ 19.1
YBX3P16989 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.16■□□□□ 0.665e-6■■■□□ 19.1
YBX3P16989 ZNF292-207ENST00000496806 770 ntTSL 319.13■□□□□ 0.655e-6■■■□□ 19.1
YBX3P16989 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.65e-6■■■□□ 19.1
YBX3P16989 PLSCR1-216ENST00000489775 984 ntTSL 518.78■□□□□ 0.65e-6■■■□□ 19.1
YBX3P16989 MED17-228ENST00000640583 2835 ntTSL 518.61■□□□□ 0.575e-6■■■□□ 19.1
YBX3P16989 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.515e-6■■■□□ 19.1
YBX3P16989 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.515e-6■■■□□ 19.1
YBX3P16989 ZNF451-206ENST00000370711 609 ntTSL 418.11■□□□□ 0.495e-6■■■□□ 19.1
YBX3P16989 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC18.07■□□□□ 0.485e-6■■■□□ 19.1
YBX3P16989 AREL1-214ENST00000556589 846 ntTSL 218.02■□□□□ 0.485e-6■■■□□ 19.1
YBX3P16989 PIGX-207ENST00000453218 1068 ntTSL 517.85■□□□□ 0.455e-6■■■□□ 19.1
YBX3P16989 PLSCR1-204ENST00000463777 701 ntTSL 317.81■□□□□ 0.445e-6■■■□□ 19.1
YBX3P16989 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.435e-6■■■□□ 19.1
YBX3P16989 PLSCR1-215ENST00000488253 581 ntTSL 317.7■□□□□ 0.425e-6■■■□□ 19.1
YBX3P16989 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.425e-6■■■□□ 19.1
YBX3P16989 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.415e-6■■■□□ 19.1
YBX3P16989 PLSCR1-213ENST00000486631 701 ntTSL 517.33■□□□□ 0.365e-6■■■□□ 19.1
YBX3P16989 MED17-217ENST00000639189 3235 ntTSL 517.3■□□□□ 0.365e-6■■■□□ 19.1
YBX3P16989 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.28■□□□□ 0.365e-6■■■□□ 19.1
YBX3P16989 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.325e-6■■■□□ 19.1
YBX3P16989 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.35e-6■■■□□ 19.1
YBX3P16989 PLSCR1-219ENST00000494568 817 ntTSL 216.69■□□□□ 0.265e-6■■■□□ 19.1
YBX3P16989 BCOR-207ENST00000412952 288 ntTSL 516.36■□□□□ 0.215e-6■■■□□ 19.1
YBX3P16989 CFAP36-205ENST00000407816 1125 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.165e-6■■■□□ 19.1
YBX3P16989 PLSCR1-203ENST00000462666 862 ntTSL 515.56■□□□□ 0.085e-6■■■□□ 19.1
YBX3P16989 CFAP36-202ENST00000349456 2048 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.055e-6■■■□□ 19.1
YBX3P16989 MED17-202ENST00000507258 3983 ntTSL 514.71□□□□□ -0.055e-6■■■□□ 19.1
YBX3P16989 MED17-222ENST00000640027 4569 ntTSL 514.21□□□□□ -0.135e-6■■■□□ 19.1
YBX3P16989 MED17-214ENST00000638487 3622 ntTSL 514.13□□□□□ -0.155e-6■■■□□ 19.1
YBX3P16989 AP3S2-209ENST00000559162 357 ntTSL 213.99□□□□□ -0.175e-6■■■□□ 19.1
YBX3P16989 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.25e-6■■■□□ 19.1
YBX3P16989 MED17-219ENST00000639523 2137 ntTSL 513.68□□□□□ -0.225e-6■■■□□ 19.1
YBX3P16989 SPG21-207ENST00000558765 624 ntTSL 313.5□□□□□ -0.255e-6■■■□□ 19.1
YBX3P16989 ARL6IP5-203ENST00000478935 1449 ntTSL 1 (best) BASIC13.27□□□□□ -0.295e-6■■■□□ 19.1
YBX3P16989 TMEM38B-202ENST00000374692 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.335e-6■■■□□ 19.1
YBX3P16989 PLSCR1-201ENST00000342435 2233 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.435e-6■■■□□ 19.1
YBX3P16989 MRPS18B-209ENST00000492316 512 ntTSL 212.23□□□□□ -0.455e-6■■■□□ 19.1
YBX3P16989 SPG21-210ENST00000559677 553 ntTSL 312.17□□□□□ -0.465e-6■■■□□ 19.1
YBX3P16989 AREL1-206ENST00000553279 706 ntTSL 511.8□□□□□ -0.525e-6■■■□□ 19.1
YBX3P16989 DNTTIP2-206ENST00000496672 811 ntTSL 1 (best)11.44□□□□□ -0.585e-6■■■□□ 19.1
YBX3P16989 PIGX-205ENST00000426755 744 ntTSL 311.32□□□□□ -0.65e-6■■■□□ 19.1
YBX3P16989 FBXW11-209ENST00000522376 713 ntTSL 510.34□□□□□ -0.755e-6■■■□□ 19.1
YBX3P16989 POMK-202ENST00000518991 564 ntTSL 410.16□□□□□ -0.785e-6■■■□□ 19.1
YBX3P16989 ARL6IP5-201ENST00000273258 2101 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.885e-6■■■□□ 19.1
YBX3P16989 PLSCR1-218ENST00000493432 1384 ntTSL 1 (best)9.45□□□□□ -0.95e-6■■■□□ 19.1
YBX3P16989 PLSCR1-211ENST00000483300 514 ntTSL 58.4□□□□□ -1.065e-6■■■□□ 19.1
YBX3P16989 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC8.25□□□□□ -1.095e-6■■■□□ 19.1
YBX3P16989 MFSD1-206ENST00000465739 639 ntTSL 58.01□□□□□ -1.135e-6■■■□□ 19.1
YBX3P16989 ATPAF1-209ENST00000529214 1471 ntTSL 27.93□□□□□ -1.145e-6■■■□□ 19.1
YBX3P16989 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.145e-6■■■□□ 19.1
YBX3P16989 PLSCR1-210ENST00000478267 870 ntTSL 27.69□□□□□ -1.185e-6■■■□□ 19.1
YBX3P16989 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.47□□□□□ -1.215e-6■■■□□ 19.1
YBX3P16989 TRIP12-214ENST00000477441 581 ntTSL 37.46□□□□□ -1.225e-6■■■□□ 19.1
YBX3P16989 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.225e-6■■■□□ 19.1
YBX3P16989 ATPAF1-208ENST00000526821 1222 ntTSL 37.11□□□□□ -1.275e-6■■■□□ 19.1
YBX3P16989 TMEM38B-204ENST00000435034 721 ntTSL 36.5□□□□□ -1.375e-6■■■□□ 19.1
YBX3P16989 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.375e-6■■■□□ 19.1
YBX3P16989 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.425e-6■■■□□ 19.1
YBX3P16989 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.61□□□□□ -1.515e-6■■■□□ 19.1
YBX3P16989 MED17-223ENST00000640077 2210 ntTSL 55.35□□□□□ -1.555e-6■■■□□ 19.1
YBX3P16989 ZNF451-218ENST00000515290 581 ntTSL 45.32□□□□□ -1.565e-6■■■□□ 19.1
YBX3P16989 ZNF451-214ENST00000509071 477 ntTSL 55.21□□□□□ -1.585e-6■■■□□ 19.1
YBX3P16989 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.745e-6■■■□□ 19.1
YBX3P16989 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.91□□□□□ -1.785e-6■■■□□ 19.1
YBX3P16989 ATPAF1-206ENST00000492233 429 ntTSL 33.83□□□□□ -1.85e-6■■■□□ 19.1
YBX3P16989 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.835e-6■■■□□ 19.1
YBX3P16989 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.98□□□□□ -1.935e-6■■■□□ 19.1
YBX3P16989 AGL-208ENST00000637337 7179 ntTSL 1 (best)2.93□□□□□ -1.945e-6■■■□□ 19.1
YBX3P16989 AGL-202ENST00000361302 7179 ntTSL 1 (best)2.93□□□□□ -1.945e-6■■■□□ 19.1
YBX3P16989 STXBP1-208ENST00000626416 3700 ntTSL 57.67□□□□□ -1.182e-6■■■□□ 19.1
YBX3P16989 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.792e-7■■■□□ 19.1
YBX3P16989 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.114e-7■■■□□ 19.1
YBX3P16989 GNAI2-205ENST00000441156 2168 ntTSL 227.55■■■□□ 24e-7■■■□□ 19.1
YBX3P16989 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.23■□□□□ 0.994e-7■■■□□ 19.1
YBX3P16989 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.44■□□□□ 0.74e-7■■■□□ 19.1
Retrieved 100 of 29,075 protein–RNA pairs in 618.7 ms