RNA–Protein interactions for RNA: ENST00000640077.1

MED17-223, Transcript of mediator complex subunit 17, human

TSL 5

Gene MED17, Length 2,210 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MED17-223	ENST00000640077	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.71	■□□□□ 0.75
MED17-223	ENST00000640077	CHIC1	Q5VXU3	224 aa		19.32	■□□□□ 0.68
MED17-223	ENST00000640077	PHF23	Q9BUL5	403 aa	Predicted RBP	16.97	■□□□□ 0.31
MED17-223	ENST00000640077	SENP3	Q9H4L4	574 aa	Predicted RBP	16.76	■□□□□ 0.27
MED17-223	ENST00000640077	PLPPR3	Q6T4P5	718 aa		15.71	■□□□□ 0.1
MED17-223	ENST00000640077	FOXD1	Q16676	465 aa		15.52	■□□□□ 0.07
MED17-223	ENST00000640077	PPP6R1	Q9UPN7	881 aa		14.94	□□□□□ -0.02
MED17-223	ENST00000640077	ADRA2B	P18089	450 aa		14.91	□□□□□ -0.02
MED17-223	ENST00000640077	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.62	□□□□□ -0.07
MED17-223	ENST00000640077	MSH5	O43196	834 aa		14.33	□□□□□ -0.12
MED17-223	ENST00000640077	PPP4R3CP	Q6ZMV5	832 aa		13.83	□□□□□ -0.2
MED17-223	ENST00000640077	SCAF1	Q9H7N4	1312 aa	Known RBP	13.7	□□□□□ -0.22
MED17-223	ENST00000640077	KCNA4	P22459	653 aa		13.52	□□□□□ -0.25
MED17-223	ENST00000640077	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.51	□□□□□ -0.25
MED17-223	ENST00000640077	NCBP3	Q53F19	620 aa	Known RBP	13.49	□□□□□ -0.25
MED17-223	ENST00000640077	CNKSR2	Q8WXI2	1034 aa		13.45	□□□□□ -0.26
MED17-223	ENST00000640077	DMRT2	Q9Y5R5	561 aa		13.39	□□□□□ -0.27
MED17-223	ENST00000640077	NPM3	O75607	178 aa	Known RBP	13.27	□□□□□ -0.28
MED17-223	ENST00000640077	RNF216	Q9NWF9	866 aa	Predicted RBP	13.19	□□□□□ -0.3
MED17-223	ENST00000640077	HOXD11	P31277	338 aa	Predicted RBP	13.15	□□□□□ -0.31
MED17-223	ENST00000640077	DNAJC5B	Q9UF47	199 aa		13	□□□□□ -0.33
MED17-223	ENST00000640077	POTED	Q86YR6	584 aa		12.96	□□□□□ -0.34
MED17-223	ENST00000640077	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.89	□□□□□ -0.35
MED17-223	ENST00000640077	DCAF8L1	A6NGE4	600 aa		12.7	□□□□□ -0.38
MED17-223	ENST00000640077	SLC4A2	P04920	1241 aa		12.53	□□□□□ -0.4
MED17-223	ENST00000640077	EHMT2	Q96KQ7	1210 aa		12.5	□□□□□ -0.41
MED17-223	ENST00000640077	FOXD4L1	Q9NU39	408 aa		12.47	□□□□□ -0.41
MED17-223	ENST00000640077	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.45	□□□□□ -0.42	1e-7	■■■■□ 23.9
MED17-223	ENST00000640077	ZBTB22	O15209	634 aa		12.45	□□□□□ -0.42
MED17-223	ENST00000640077	CSRNP3	Q8WYN3	585 aa		12.41	□□□□□ -0.42
MED17-223	ENST00000640077	MYCN	P04198	464 aa	Predicted RBP	12.29	□□□□□ -0.44
MED17-223	ENST00000640077		U3KPZ7	1027 aa	Predicted RBP	12.29	□□□□□ -0.44
MED17-223	ENST00000640077	RNF39	Q9H2S5	420 aa		12.27	□□□□□ -0.44
MED17-223	ENST00000640077	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.17	□□□□□ -0.46
MED17-223	ENST00000640077	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.17	□□□□□ -0.46
MED17-223	ENST00000640077	C1QBP	Q07021	282 aa	Known RBP	12.14	□□□□□ -0.47
MED17-223	ENST00000640077	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.12	□□□□□ -0.47
MED17-223	ENST00000640077	ATXN8OS	P0DMR3	200 aa		12.07	□□□□□ -0.48
MED17-223	ENST00000640077	APLP2	Q06481	763 aa		12.05	□□□□□ -0.48
MED17-223	ENST00000640077	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.91	□□□□□ -0.5
MED17-223	ENST00000640077	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.9	□□□□□ -0.5
MED17-223	ENST00000640077	CACNB1	Q02641	598 aa	Predicted RBP	11.88	□□□□□ -0.51
MED17-223	ENST00000640077	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.85	□□□□□ -0.51
MED17-223	ENST00000640077	CAPN15	O75808	1086 aa		11.84	□□□□□ -0.51
MED17-223	ENST00000640077	TRH	P20396	242 aa	Predicted RBP	11.78	□□□□□ -0.52
MED17-223	ENST00000640077	DSG3	P32926	999 aa		11.68	□□□□□ -0.54
MED17-223	ENST00000640077	POLA2	Q14181	598 aa		11.63	□□□□□ -0.55
MED17-223	ENST00000640077	ABCB7	O75027	752 aa		11.61	□□□□□ -0.55
MED17-223	ENST00000640077	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.5	□□□□□ -0.57
MED17-223	ENST00000640077	FBLN2	P98095	1184 aa		11.43	□□□□□ -0.58
MED17-223	ENST00000640077	MKRN4P	Q13434	485 aa	Predicted RBP	11.41	□□□□□ -0.58
MED17-223	ENST00000640077	OSCAR	Q8IYS5	282 aa		11.23	□□□□□ -0.61
MED17-223	ENST00000640077	FKBP8	Q14318	412 aa		11.19	□□□□□ -0.62
MED17-223	ENST00000640077	SPDYE2B	A6NHP3	402 aa		11.18	□□□□□ -0.62
MED17-223	ENST00000640077	SPDYE6	P0CI01	402 aa		11.18	□□□□□ -0.62
MED17-223	ENST00000640077	SPDYE2	Q495Y8	402 aa		11.18	□□□□□ -0.62
MED17-223	ENST00000640077	SPDYE4	A6NLX3	237 aa		11.17	□□□□□ -0.62
MED17-223	ENST00000640077	RBM42	Q9BTD8	480 aa	Known RBP	11.15	□□□□□ -0.62
MED17-223	ENST00000640077	ZNF692	Q9BU19	519 aa	Predicted RBP	11.1	□□□□□ -0.63
MED17-223	ENST00000640077	SSUH2	Q9Y2M2	353 aa		11.1	□□□□□ -0.63
MED17-223	ENST00000640077	PROM2	Q8N271	834 aa		11.05	□□□□□ -0.64
MED17-223	ENST00000640077	AKT1S1	Q96B36	256 aa		11.02	□□□□□ -0.65
MED17-223	ENST00000640077	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.95	□□□□□ -0.66
MED17-223	ENST00000640077	REM2	Q8IYK8	340 aa	Predicted RBP	10.88	□□□□□ -0.67
MED17-223	ENST00000640077	FBXO3	Q9UK99	471 aa		10.84	□□□□□ -0.67
MED17-223	ENST00000640077	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.82	□□□□□ -0.68
MED17-223	ENST00000640077	STAG3	Q9UJ98	1225 aa		10.82	□□□□□ -0.68
MED17-223	ENST00000640077	PITPNM1	O00562	1244 aa		10.76	□□□□□ -0.69
MED17-223	ENST00000640077	CLEC11A	Q9Y240	323 aa		10.72	□□□□□ -0.69
MED17-223	ENST00000640077	VASP	P50552	380 aa	Predicted RBP	10.66	□□□□□ -0.7
MED17-223	ENST00000640077	PRR29	P0C7W0	189 aa		10.66	□□□□□ -0.7
MED17-223	ENST00000640077	CHRDL2	Q6WN34	429 aa		10.64	□□□□□ -0.71
MED17-223	ENST00000640077	FXR2	P51116	673 aa	Known RBP eCLIP	10.58	□□□□□ -0.72
MED17-223	ENST00000640077	MIER1	Q8N108	512 aa		10.56	□□□□□ -0.72
MED17-223	ENST00000640077	PLCD3	Q8N3E9	789 aa		10.55	□□□□□ -0.72
MED17-223	ENST00000640077	CREBZF	Q9NS37	354 aa		10.55	□□□□□ -0.72
MED17-223	ENST00000640077	PLEKHG5	O94827	1062 aa		10.53	□□□□□ -0.72
MED17-223	ENST00000640077	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.52	□□□□□ -0.73
MED17-223	ENST00000640077	PIP4P2	Q8N4L2	257 aa		10.52	□□□□□ -0.73
MED17-223	ENST00000640077	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.49	□□□□□ -0.73
MED17-223	ENST00000640077	PRKAR2A	P13861	404 aa	Known RBP	10.48	□□□□□ -0.73
MED17-223	ENST00000640077	MNX1	P50219	401 aa	Predicted RBP	10.46	□□□□□ -0.73
MED17-223	ENST00000640077	CHADL	Q6NUI6	762 aa		10.45	□□□□□ -0.74
MED17-223	ENST00000640077	KLHL34	Q8N239	644 aa		10.43	□□□□□ -0.74
MED17-223	ENST00000640077	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.41	□□□□□ -0.74
MED17-223	ENST00000640077	SPOCK2	Q92563	424 aa		10.39	□□□□□ -0.75
MED17-223	ENST00000640077	NPM1	P06748	294 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
MED17-223	ENST00000640077	NUBP1	P53384	320 aa		10.33	□□□□□ -0.76
MED17-223	ENST00000640077	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.3	□□□□□ -0.76
MED17-223	ENST00000640077	POTEH	Q6S545	545 aa		10.26	□□□□□ -0.77
MED17-223	ENST00000640077	RASEF	Q8IZ41	740 aa		10.26	□□□□□ -0.77
MED17-223	ENST00000640077	FAM212A	Q96EL1	285 aa		10.24	□□□□□ -0.77
MED17-223	ENST00000640077	GSE1	Q14687	1217 aa		10.23	□□□□□ -0.77
MED17-223	ENST00000640077	C19orf67	A6NJJ6	358 aa		10.22	□□□□□ -0.77
MED17-223	ENST00000640077	RTN4	Q9NQC3	1192 aa	Known RBP	10.22	□□□□□ -0.77
MED17-223	ENST00000640077	DCAF8	Q5TAQ9	597 aa		10.19	□□□□□ -0.78
MED17-223	ENST00000640077	PAK3	O75914	559 aa	Predicted RBP	10.18	□□□□□ -0.78
MED17-223	ENST00000640077	CD44	P16070	742 aa	Known RBP	10.18	□□□□□ -0.78
MED17-223	ENST00000640077	PKD2	Q13563	968 aa		10.18	□□□□□ -0.78
MED17-223	ENST00000640077	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.18	□□□□□ -0.78

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