Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.57■■□□□ 1.04
VIMP08670 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.57■■□□□ 1.04
VIMP08670 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
VIMP08670 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.56■■□□□ 1.04
VIMP08670 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VIMP08670 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 LINC01529-204ENST00000636474 1715 ntBASIC21.55■■□□□ 1.04
VIMP08670 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.55■■□□□ 1.04
VIMP08670 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.55■■□□□ 1.04
VIMP08670 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.55■■□□□ 1.04
VIMP08670 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
VIMP08670 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 AC007952.6-201ENST00000573168 2673 ntBASIC21.55■■□□□ 1.04
VIMP08670 AC003957.1-201ENST00000625108 2673 ntBASIC21.55■■□□□ 1.04
VIMP08670 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.55■■□□□ 1.04
VIMP08670 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VIMP08670 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VIMP08670 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.54■■□□□ 1.04
VIMP08670 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VIMP08670 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.54■■□□□ 1.04
VIMP08670 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.54■■□□□ 1.04
VIMP08670 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.54■■□□□ 1.04
VIMP08670 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VIMP08670 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
VIMP08670 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
VIMP08670 DUX4L9-201ENST00000449051 1259 ntBASIC21.53■■□□□ 1.04
VIMP08670 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VIMP08670 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VIMP08670 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VIMP08670 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.52■■□□□ 1.04
VIMP08670 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.52■■□□□ 1.04
VIMP08670 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.52■■□□□ 1.04
VIMP08670 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
VIMP08670 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
VIMP08670 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VIMP08670 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.52■■□□□ 1.04
VIMP08670 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.52■■□□□ 1.04
VIMP08670 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VIMP08670 AF131216.4-201ENST00000638924 1588 ntBASIC21.52■■□□□ 1.04
VIMP08670 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
VIMP08670 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.52■■□□□ 1.03
VIMP08670 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
VIMP08670 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VIMP08670 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
VIMP08670 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.51■■□□□ 1.03
VIMP08670 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VIMP08670 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.51■■□□□ 1.03
VIMP08670 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.51■■□□□ 1.03
VIMP08670 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
VIMP08670 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VIMP08670 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms