Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV41A0A0B4J266 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV41A0A0B4J266 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV41A0A0B4J266 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 AP004607.7-201ENST00000527152 1677 ntBASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 JTB-203ENST00000368589 1216 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 NT5C3AP1-201ENST00000394500 1012 ntBASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 BX005040.4-201ENST00000637145 1518 ntBASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 AL117328.2-201ENST00000624617 1940 ntBASIC16.94■□□□□ 0.3
TRAV41A0A0B4J266 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 ASL-203ENST00000380839 1765 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TRAV41A0A0B4J266 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 AC027612.3-201ENST00000413684 1047 ntBASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TRAV41A0A0B4J266 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 ECEL1P1-201ENST00000373592 1742 ntBASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV41A0A0B4J266 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms