Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.26■■□□□ 1.95
NPHP1O15259 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
NPHP1O15259 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.25■■□□□ 1.95
NPHP1O15259 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
NPHP1O15259 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
NPHP1O15259 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.25■■□□□ 1.95
NPHP1O15259 AL050303.2-201ENST00000619798 666 ntBASIC27.25■■□□□ 1.95
NPHP1O15259 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NPHP1O15259 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
NPHP1O15259 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC27.24■■□□□ 1.95
NPHP1O15259 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 TSPY6P-201ENST00000448518 926 ntBASIC27.24■■□□□ 1.95
NPHP1O15259 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC27.24■■□□□ 1.95
NPHP1O15259 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.24■■□□□ 1.95
NPHP1O15259 AC142086.2-201ENST00000569753 217 ntBASIC27.24■■□□□ 1.95
NPHP1O15259 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.24■■□□□ 1.95
NPHP1O15259 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
NPHP1O15259 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NPHP1O15259 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
NPHP1O15259 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
NPHP1O15259 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
NPHP1O15259 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
NPHP1O15259 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
NPHP1O15259 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
NPHP1O15259 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
NPHP1O15259 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.22■■□□□ 1.95
NPHP1O15259 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 DUX4L16-201ENST00000555130 1264 ntBASIC27.22■■□□□ 1.95
NPHP1O15259 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.22■■□□□ 1.95
NPHP1O15259 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC27.22■■□□□ 1.95
NPHP1O15259 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 PXK-203ENST00000383715 1756 ntTSL 5 BASIC27.22■■□□□ 1.95
NPHP1O15259 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.22■■□□□ 1.95
NPHP1O15259 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
NPHP1O15259 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
NPHP1O15259 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
NPHP1O15259 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
NPHP1O15259 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NPHP1O15259 DUSP8P3-201ENST00000399571 1760 ntBASIC27.21■■□□□ 1.95
NPHP1O15259 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
NPHP1O15259 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NPHP1O15259 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
NPHP1O15259 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC27.2■■□□□ 1.95
NPHP1O15259 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
NPHP1O15259 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.2■■□□□ 1.94
NPHP1O15259 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
NPHP1O15259 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.2■■□□□ 1.94
NPHP1O15259 KRT18P6-201ENST00000555540 1265 ntBASIC27.2■■□□□ 1.94
NPHP1O15259 AP001160.3-201ENST00000601484 763 ntBASIC27.2■■□□□ 1.94
NPHP1O15259 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.2■■□□□ 1.94
NPHP1O15259 MYCNOS-205ENST00000641950 531 ntBASIC27.2■■□□□ 1.94
NPHP1O15259 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC27.19■■□□□ 1.94
NPHP1O15259 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC27.19■■□□□ 1.94
NPHP1O15259 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.19■■□□□ 1.94
NPHP1O15259 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
NPHP1O15259 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 AL139125.2-201ENST00000623134 1869 ntBASIC27.19■■□□□ 1.94
NPHP1O15259 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.19■■□□□ 1.94
NPHP1O15259 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC27.19■■□□□ 1.94
NPHP1O15259 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.19■■□□□ 1.94
NPHP1O15259 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.19■■□□□ 1.94
NPHP1O15259 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NPHP1O15259 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.18■■□□□ 1.94
NPHP1O15259 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
NPHP1O15259 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC27.18■■□□□ 1.94
NPHP1O15259 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NPHP1O15259 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
NPHP1O15259 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
NPHP1O15259 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC27.18■■□□□ 1.94
NPHP1O15259 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms