Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV1-1A0A0B4J248 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV1-1A0A0B4J248 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.89■□□□□ 0.3
TRAV1-1A0A0B4J248 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 FP325331.1-202ENST00000623531 1380 ntBASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 AL391422.3-201ENST00000603791 2761 ntBASIC16.89■□□□□ 0.29
TRAV1-1A0A0B4J248 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV1-1A0A0B4J248 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 AC004448.1-201ENST00000458332 883 ntBASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV1-1A0A0B4J248 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 AC009086.3-201ENST00000623486 1008 ntBASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 AP005212.1-201ENST00000581547 1997 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms