Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.82■■■□□ 2.68
PTPN22Q9Y2R2 MIR639-201ENST00000384974 98 ntBASIC31.79■■■□□ 2.68
PTPN22Q9Y2R2 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.78■■■□□ 2.68
PTPN22Q9Y2R2 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PTPN22Q9Y2R2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.77■■■□□ 2.68
PTPN22Q9Y2R2 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PTPN22Q9Y2R2 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
PTPN22Q9Y2R2 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
PTPN22Q9Y2R2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
PTPN22Q9Y2R2 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.7■■■□□ 2.67
PTPN22Q9Y2R2 DUX4L29-201ENST00000425409 679 ntBASIC31.69■■■□□ 2.66
PTPN22Q9Y2R2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.67■■■□□ 2.66
PTPN22Q9Y2R2 HSD17B1P1-201ENST00000590052 955 ntBASIC31.67■■■□□ 2.66
PTPN22Q9Y2R2 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
PTPN22Q9Y2R2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.65■■■□□ 2.66
PTPN22Q9Y2R2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
PTPN22Q9Y2R2 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
PTPN22Q9Y2R2 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.64■■■□□ 2.66
PTPN22Q9Y2R2 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
PTPN22Q9Y2R2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
PTPN22Q9Y2R2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
PTPN22Q9Y2R2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.62■■■□□ 2.65
PTPN22Q9Y2R2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.59■■■□□ 2.65
PTPN22Q9Y2R2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.58■■■□□ 2.65
PTPN22Q9Y2R2 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
PTPN22Q9Y2R2 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
PTPN22Q9Y2R2 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
PTPN22Q9Y2R2 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
PTPN22Q9Y2R2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.54■■■□□ 2.64
PTPN22Q9Y2R2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.54■■■□□ 2.64
PTPN22Q9Y2R2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.54■■■□□ 2.64
PTPN22Q9Y2R2 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.53■■■□□ 2.64
PTPN22Q9Y2R2 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.52■■■□□ 2.64
PTPN22Q9Y2R2 AC021231.2-201ENST00000594613 730 ntBASIC31.51■■■□□ 2.63
PTPN22Q9Y2R2 MIR3648-2-201ENST00000581792 180 ntBASIC31.5■■■□□ 2.63
PTPN22Q9Y2R2 AC016575.1-201ENST00000607026 382 ntBASIC31.5■■■□□ 2.63
PTPN22Q9Y2R2 MIR3648-1-201ENST00000615959 180 ntBASIC31.5■■■□□ 2.63
PTPN22Q9Y2R2 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PTPN22Q9Y2R2 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PTPN22Q9Y2R2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
PTPN22Q9Y2R2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
PTPN22Q9Y2R2 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.47■■■□□ 2.63
PTPN22Q9Y2R2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.46■■■□□ 2.63
PTPN22Q9Y2R2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
PTPN22Q9Y2R2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
PTPN22Q9Y2R2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.41■■■□□ 2.62
PTPN22Q9Y2R2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.4■■■□□ 2.62
PTPN22Q9Y2R2 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
PTPN22Q9Y2R2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.39■■■□□ 2.61
PTPN22Q9Y2R2 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
PTPN22Q9Y2R2 WASH5P-204ENST00000632292 975 ntBASIC31.38■■■□□ 2.61
PTPN22Q9Y2R2 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
PTPN22Q9Y2R2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PTPN22Q9Y2R2 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.36■■■□□ 2.61
PTPN22Q9Y2R2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.35■■■□□ 2.61
PTPN22Q9Y2R2 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
PTPN22Q9Y2R2 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.35■■■□□ 2.61
PTPN22Q9Y2R2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
PTPN22Q9Y2R2 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
PTPN22Q9Y2R2 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.33■■■□□ 2.61
PTPN22Q9Y2R2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.32■■■□□ 2.6
PTPN22Q9Y2R2 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.3■■■□□ 2.6
PTPN22Q9Y2R2 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.3■■■□□ 2.6
PTPN22Q9Y2R2 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
PTPN22Q9Y2R2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
PTPN22Q9Y2R2 CR559946.2-201ENST00000623684 991 ntBASIC31.27■■■□□ 2.6
PTPN22Q9Y2R2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
PTPN22Q9Y2R2 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.26■■■□□ 2.59
PTPN22Q9Y2R2 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PTPN22Q9Y2R2 DUX4L11-201ENST00000611504 1267 ntBASIC31.25■■■□□ 2.59
PTPN22Q9Y2R2 DUX4L12-201ENST00000614593 1267 ntBASIC31.25■■■□□ 2.59
PTPN22Q9Y2R2 DUX4L14-201ENST00000621227 1267 ntBASIC31.25■■■□□ 2.59
PTPN22Q9Y2R2 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PTPN22Q9Y2R2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
PTPN22Q9Y2R2 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.22■■■□□ 2.59
PTPN22Q9Y2R2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.22■■■□□ 2.59
PTPN22Q9Y2R2 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
PTPN22Q9Y2R2 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
PTPN22Q9Y2R2 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
PTPN22Q9Y2R2 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
PTPN22Q9Y2R2 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PTPN22Q9Y2R2 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PTPN22Q9Y2R2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
PTPN22Q9Y2R2 LINC01971-201ENST00000617888 1048 ntBASIC31.18■■■□□ 2.58
PTPN22Q9Y2R2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PTPN22Q9Y2R2 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PTPN22Q9Y2R2 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.17■■■□□ 2.58
PTPN22Q9Y2R2 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
PTPN22Q9Y2R2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
PTPN22Q9Y2R2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.16■■■□□ 2.58
PTPN22Q9Y2R2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
PTPN22Q9Y2R2 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
PTPN22Q9Y2R2 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
PTPN22Q9Y2R2 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.14■■■□□ 2.58
PTPN22Q9Y2R2 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms