Protein–RNA interactions for Protein: Q9NRR3

CDC42SE2, CDC42 small effector protein 2, humanhuman

Predictions only

Length 84 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2Q9NRR3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDC42SE2Q9NRR3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDC42SE2Q9NRR3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDC42SE2Q9NRR3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CDC42SE2Q9NRR3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDC42SE2Q9NRR3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC18.67■□□□□ 0.58
CDC42SE2Q9NRR3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CDC42SE2Q9NRR3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDC42SE2Q9NRR3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDC42SE2Q9NRR3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDC42SE2Q9NRR3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDC42SE2Q9NRR3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDC42SE2Q9NRR3 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDC42SE2Q9NRR3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDC42SE2Q9NRR3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
CDC42SE2Q9NRR3 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC18.65■□□□□ 0.58
CDC42SE2Q9NRR3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDC42SE2Q9NRR3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDC42SE2Q9NRR3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CDC42SE2Q9NRR3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDC42SE2Q9NRR3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
CDC42SE2Q9NRR3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDC42SE2Q9NRR3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CDC42SE2Q9NRR3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDC42SE2Q9NRR3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDC42SE2Q9NRR3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDC42SE2Q9NRR3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDC42SE2Q9NRR3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDC42SE2Q9NRR3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDC42SE2Q9NRR3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDC42SE2Q9NRR3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDC42SE2Q9NRR3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDC42SE2Q9NRR3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDC42SE2Q9NRR3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDC42SE2Q9NRR3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.57■□□□□ 0.56
CDC42SE2Q9NRR3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDC42SE2Q9NRR3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDC42SE2Q9NRR3 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDC42SE2Q9NRR3 DYNLL1-208ENST00000550178 581 ntBASIC18.56■□□□□ 0.56
CDC42SE2Q9NRR3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDC42SE2Q9NRR3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDC42SE2Q9NRR3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDC42SE2Q9NRR3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDC42SE2Q9NRR3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC18.54■□□□□ 0.56
CDC42SE2Q9NRR3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CDC42SE2Q9NRR3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDC42SE2Q9NRR3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDC42SE2Q9NRR3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDC42SE2Q9NRR3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDC42SE2Q9NRR3 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDC42SE2Q9NRR3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC18.52■□□□□ 0.56
CDC42SE2Q9NRR3 AC139426.1-201ENST00000568218 2529 ntBASIC18.51■□□□□ 0.55
CDC42SE2Q9NRR3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDC42SE2Q9NRR3 AL161658.1-201ENST00000623641 1967 ntBASIC18.51■□□□□ 0.55
CDC42SE2Q9NRR3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC18.51■□□□□ 0.55
CDC42SE2Q9NRR3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDC42SE2Q9NRR3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDC42SE2Q9NRR3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDC42SE2Q9NRR3 ST7-AS1-201ENST00000456775 1889 ntBASIC18.5■□□□□ 0.55
CDC42SE2Q9NRR3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDC42SE2Q9NRR3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC18.49■□□□□ 0.55
CDC42SE2Q9NRR3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CDC42SE2Q9NRR3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDC42SE2Q9NRR3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDC42SE2Q9NRR3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDC42SE2Q9NRR3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDC42SE2Q9NRR3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CDC42SE2Q9NRR3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDC42SE2Q9NRR3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CDC42SE2Q9NRR3 AL031258.1-201ENST00000623562 325 ntBASIC18.45■□□□□ 0.54
CDC42SE2Q9NRR3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDC42SE2Q9NRR3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CDC42SE2Q9NRR3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDC42SE2Q9NRR3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDC42SE2Q9NRR3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CDC42SE2Q9NRR3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.43■□□□□ 0.54
CDC42SE2Q9NRR3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDC42SE2Q9NRR3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDC42SE2Q9NRR3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDC42SE2Q9NRR3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CDC42SE2Q9NRR3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDC42SE2Q9NRR3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
CDC42SE2Q9NRR3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDC42SE2Q9NRR3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDC42SE2Q9NRR3 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDC42SE2Q9NRR3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDC42SE2Q9NRR3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDC42SE2Q9NRR3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC18.39■□□□□ 0.53
CDC42SE2Q9NRR3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDC42SE2Q9NRR3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDC42SE2Q9NRR3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDC42SE2Q9NRR3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDC42SE2Q9NRR3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.38■□□□□ 0.53
CDC42SE2Q9NRR3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDC42SE2Q9NRR3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDC42SE2Q9NRR3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDC42SE2Q9NRR3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDC42SE2Q9NRR3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CDC42SE2Q9NRR3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDC42SE2Q9NRR3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms