Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RAB40CQ96S21 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
RAB40CQ96S21 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
RAB40CQ96S21 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RAB40CQ96S21 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RAB40CQ96S21 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
RAB40CQ96S21 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
RAB40CQ96S21 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.96■■□□□ 1.11
RAB40CQ96S21 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RAB40CQ96S21 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.95■■□□□ 1.1
RAB40CQ96S21 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RAB40CQ96S21 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RAB40CQ96S21 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB40CQ96S21 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.94■■□□□ 1.1
RAB40CQ96S21 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB40CQ96S21 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB40CQ96S21 AC139426.1-201ENST00000568218 2529 ntBASIC21.91■■□□□ 1.1
RAB40CQ96S21 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC21.91■■□□□ 1.1
RAB40CQ96S21 AL161658.1-201ENST00000623641 1967 ntBASIC21.9■■□□□ 1.1
RAB40CQ96S21 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RAB40CQ96S21 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.9■■□□□ 1.1
RAB40CQ96S21 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RAB40CQ96S21 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RAB40CQ96S21 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RAB40CQ96S21 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
RAB40CQ96S21 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RAB40CQ96S21 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RAB40CQ96S21 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RAB40CQ96S21 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC21.86■■□□□ 1.09
RAB40CQ96S21 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RAB40CQ96S21 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RAB40CQ96S21 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
RAB40CQ96S21 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RAB40CQ96S21 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
RAB40CQ96S21 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RAB40CQ96S21 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RAB40CQ96S21 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RAB40CQ96S21 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RAB40CQ96S21 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC21.81■■□□□ 1.08
RAB40CQ96S21 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RAB40CQ96S21 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RAB40CQ96S21 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
RAB40CQ96S21 MVK-208ENST00000539696 608 ntTSL 5 BASIC21.8■■□□□ 1.08
RAB40CQ96S21 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RAB40CQ96S21 ST7-AS1-201ENST00000456775 1889 ntBASIC21.78■■□□□ 1.08
RAB40CQ96S21 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RAB40CQ96S21 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RAB40CQ96S21 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.77■■□□□ 1.08
RAB40CQ96S21 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RAB40CQ96S21 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.77■■□□□ 1.08
RAB40CQ96S21 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RAB40CQ96S21 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
RAB40CQ96S21 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RAB40CQ96S21 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
RAB40CQ96S21 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB40CQ96S21 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RAB40CQ96S21 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RAB40CQ96S21 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RAB40CQ96S21 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.72■■□□□ 1.07
RAB40CQ96S21 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.71■■□□□ 1.07
RAB40CQ96S21 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RAB40CQ96S21 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
RAB40CQ96S21 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RAB40CQ96S21 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RAB40CQ96S21 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RAB40CQ96S21 AC006077.2-201ENST00000623591 457 ntBASIC21.69■■□□□ 1.06
RAB40CQ96S21 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RAB40CQ96S21 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RAB40CQ96S21 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RAB40CQ96S21 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAB40CQ96S21 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RAB40CQ96S21 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAB40CQ96S21 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.66■■□□□ 1.06
RAB40CQ96S21 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAB40CQ96S21 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.65■■□□□ 1.06
RAB40CQ96S21 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.65■■□□□ 1.06
RAB40CQ96S21 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RAB40CQ96S21 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC21.64■■□□□ 1.05
RAB40CQ96S21 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.64■■□□□ 1.05
RAB40CQ96S21 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RAB40CQ96S21 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
RAB40CQ96S21 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RAB40CQ96S21 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.63■■□□□ 1.05
RAB40CQ96S21 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
RAB40CQ96S21 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RAB40CQ96S21 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.62■■□□□ 1.05
RAB40CQ96S21 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
RAB40CQ96S21 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC21.61■■□□□ 1.05
RAB40CQ96S21 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RAB40CQ96S21 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RAB40CQ96S21 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
RAB40CQ96S21 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RAB40CQ96S21 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.6■■□□□ 1.05
RAB40CQ96S21 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RAB40CQ96S21 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RAB40CQ96S21 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RAB40CQ96S21 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RAB40CQ96S21 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RAB40CQ96S21 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RAB40CQ96S21 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms