Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
LRCH3Q96II8 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
LRCH3Q96II8 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.26■■■□□ 2.43
LRCH3Q96II8 MIR3648-2-201ENST00000581792 180 ntBASIC30.23■■■□□ 2.43
LRCH3Q96II8 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.23■■■□□ 2.43
LRCH3Q96II8 MIR3648-1-201ENST00000615959 180 ntBASIC30.23■■■□□ 2.43
LRCH3Q96II8 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.21■■■□□ 2.43
LRCH3Q96II8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
LRCH3Q96II8 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
LRCH3Q96II8 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.21■■■□□ 2.43
LRCH3Q96II8 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
LRCH3Q96II8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.2■■■□□ 2.43
LRCH3Q96II8 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.2■■■□□ 2.43
LRCH3Q96II8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.2■■■□□ 2.43
LRCH3Q96II8 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.2■■■□□ 2.43
LRCH3Q96II8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.18■■■□□ 2.42
LRCH3Q96II8 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
LRCH3Q96II8 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
LRCH3Q96II8 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
LRCH3Q96II8 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.16■■■□□ 2.42
LRCH3Q96II8 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
LRCH3Q96II8 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.11■■■□□ 2.41
LRCH3Q96II8 AC021231.2-201ENST00000594613 730 ntBASIC30.11■■■□□ 2.41
LRCH3Q96II8 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
LRCH3Q96II8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
LRCH3Q96II8 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
LRCH3Q96II8 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.09■■■□□ 2.41
LRCH3Q96II8 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.09■■■□□ 2.41
LRCH3Q96II8 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
LRCH3Q96II8 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
LRCH3Q96II8 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
LRCH3Q96II8 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
LRCH3Q96II8 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.05■■■□□ 2.4
LRCH3Q96II8 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.05■■■□□ 2.4
LRCH3Q96II8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
LRCH3Q96II8 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
LRCH3Q96II8 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.03■■■□□ 2.4
LRCH3Q96II8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
LRCH3Q96II8 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
LRCH3Q96II8 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.99■■■□□ 2.39
LRCH3Q96II8 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
LRCH3Q96II8 CR559946.2-201ENST00000623684 991 ntBASIC29.99■■■□□ 2.39
LRCH3Q96II8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.99■■■□□ 2.39
LRCH3Q96II8 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
LRCH3Q96II8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
LRCH3Q96II8 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.97■■■□□ 2.39
LRCH3Q96II8 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29.97■■■□□ 2.39
LRCH3Q96II8 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.97■■■□□ 2.39
LRCH3Q96II8 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
LRCH3Q96II8 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
LRCH3Q96II8 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
LRCH3Q96II8 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
LRCH3Q96II8 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.94■■■□□ 2.38
LRCH3Q96II8 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
LRCH3Q96II8 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
LRCH3Q96II8 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
LRCH3Q96II8 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
LRCH3Q96II8 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
LRCH3Q96II8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.92■■■□□ 2.38
LRCH3Q96II8 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.9■■■□□ 2.38
LRCH3Q96II8 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
LRCH3Q96II8 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.89■■■□□ 2.38
LRCH3Q96II8 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.89■■■□□ 2.38
LRCH3Q96II8 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC29.88■■■□□ 2.37
LRCH3Q96II8 DUX4L11-201ENST00000611504 1267 ntBASIC29.88■■■□□ 2.37
LRCH3Q96II8 DUX4L12-201ENST00000614593 1267 ntBASIC29.88■■■□□ 2.37
LRCH3Q96II8 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.88■■■□□ 2.37
LRCH3Q96II8 DUX4L14-201ENST00000621227 1267 ntBASIC29.88■■■□□ 2.37
LRCH3Q96II8 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
LRCH3Q96II8 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
LRCH3Q96II8 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.86■■■□□ 2.37
LRCH3Q96II8 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.86■■■□□ 2.37
LRCH3Q96II8 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
LRCH3Q96II8 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.85■■■□□ 2.37
LRCH3Q96II8 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
LRCH3Q96II8 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
LRCH3Q96II8 RARRES2P2-201ENST00000394842 485 ntBASIC29.79■■■□□ 2.36
LRCH3Q96II8 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
LRCH3Q96II8 ABHD17AP5-201ENST00000580133 923 ntBASIC29.79■■■□□ 2.36
LRCH3Q96II8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.78■■■□□ 2.36
LRCH3Q96II8 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.76■■■□□ 2.35
LRCH3Q96II8 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
LRCH3Q96II8 LINC01971-201ENST00000617888 1048 ntBASIC29.73■■■□□ 2.35
LRCH3Q96II8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
LRCH3Q96II8 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
LRCH3Q96II8 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
LRCH3Q96II8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.71■■■□□ 2.35
LRCH3Q96II8 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.71■■■□□ 2.35
LRCH3Q96II8 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
LRCH3Q96II8 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
LRCH3Q96II8 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
LRCH3Q96II8 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC29.68■■■□□ 2.34
LRCH3Q96II8 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.66■■■□□ 2.34
LRCH3Q96II8 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
LRCH3Q96II8 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
LRCH3Q96II8 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.65■■■□□ 2.34
LRCH3Q96II8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.62■■■□□ 2.33
LRCH3Q96II8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
LRCH3Q96II8 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.61■■■□□ 2.33
LRCH3Q96II8 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 6.7 ms