Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC33.4■■■□□ 2.94
USP48Q86UV5 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC33.39■■■□□ 2.94
USP48Q86UV5 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
USP48Q86UV5 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC33.39■■■□□ 2.94
USP48Q86UV5 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
USP48Q86UV5 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
USP48Q86UV5 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP48Q86UV5 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP48Q86UV5 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
USP48Q86UV5 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC33.34■■■□□ 2.93
USP48Q86UV5 ZNRF2P2-203ENST00000454624 420 ntBASIC33.33■■■□□ 2.93
USP48Q86UV5 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC33.33■■■□□ 2.93
USP48Q86UV5 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC33.31■■■□□ 2.92
USP48Q86UV5 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
USP48Q86UV5 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC33.31■■■□□ 2.92
USP48Q86UV5 ST7-205ENST00000393446 2114 ntTSL 5 BASIC33.3■■■□□ 2.92
USP48Q86UV5 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC33.3■■■□□ 2.92
USP48Q86UV5 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC33.3■■■□□ 2.92
USP48Q86UV5 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC33.3■■■□□ 2.92
USP48Q86UV5 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC33.3■■■□□ 2.92
USP48Q86UV5 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC33.3■■■□□ 2.92
USP48Q86UV5 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
USP48Q86UV5 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
USP48Q86UV5 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC33.29■■■□□ 2.92
USP48Q86UV5 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC33.29■■■□□ 2.92
USP48Q86UV5 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC33.25■■■□□ 2.91
USP48Q86UV5 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
USP48Q86UV5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
USP48Q86UV5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC33.23■■■□□ 2.91
USP48Q86UV5 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
USP48Q86UV5 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC33.22■■■□□ 2.91
USP48Q86UV5 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
USP48Q86UV5 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
USP48Q86UV5 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USP48Q86UV5 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC33.17■■■□□ 2.9
USP48Q86UV5 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USP48Q86UV5 ST7-202ENST00000323984 2142 ntTSL 5 BASIC33.16■■■□□ 2.9
USP48Q86UV5 ST7-207ENST00000393449 2127 ntTSL 5 BASIC33.16■■■□□ 2.9
USP48Q86UV5 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USP48Q86UV5 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC33.14■■■□□ 2.9
USP48Q86UV5 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC33.14■■■□□ 2.9
USP48Q86UV5 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP48Q86UV5 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP48Q86UV5 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
USP48Q86UV5 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
USP48Q86UV5 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
USP48Q86UV5 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC33.11■■■□□ 2.89
USP48Q86UV5 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC33.11■■■□□ 2.89
USP48Q86UV5 HGH1-207ENST00000628266 258 ntTSL 5 BASIC33.11■■■□□ 2.89
USP48Q86UV5 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC33.11■■■□□ 2.89
USP48Q86UV5 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC33.1■■■□□ 2.89
USP48Q86UV5 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
USP48Q86UV5 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
USP48Q86UV5 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC33.09■■■□□ 2.89
USP48Q86UV5 DENR-202ENST00000455982 1052 ntTSL 5 BASIC33.08■■■□□ 2.89
USP48Q86UV5 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC33.08■■■□□ 2.89
USP48Q86UV5 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.07■■■□□ 2.89
USP48Q86UV5 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.89
USP48Q86UV5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
USP48Q86UV5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC33.05■■■□□ 2.88
USP48Q86UV5 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
USP48Q86UV5 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.04■■■□□ 2.88
USP48Q86UV5 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC33.02■■■□□ 2.88
USP48Q86UV5 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
USP48Q86UV5 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
USP48Q86UV5 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC33.01■■■□□ 2.87
USP48Q86UV5 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC33.01■■■□□ 2.87
USP48Q86UV5 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC33■■■□□ 2.87
USP48Q86UV5 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
USP48Q86UV5 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC33■■■□□ 2.87
USP48Q86UV5 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC33■■■□□ 2.87
USP48Q86UV5 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
USP48Q86UV5 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
USP48Q86UV5 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
USP48Q86UV5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
USP48Q86UV5 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
USP48Q86UV5 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.95■■■□□ 2.87
USP48Q86UV5 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.95■■■□□ 2.87
USP48Q86UV5 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
USP48Q86UV5 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC32.94■■■□□ 2.86
USP48Q86UV5 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.93■■■□□ 2.86
USP48Q86UV5 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP48Q86UV5 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP48Q86UV5 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
USP48Q86UV5 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.92■■■□□ 2.86
USP48Q86UV5 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.91■■■□□ 2.86
USP48Q86UV5 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
USP48Q86UV5 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
USP48Q86UV5 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.91■■■□□ 2.86
USP48Q86UV5 MIR4449-201ENST00000578365 66 ntBASIC32.9■■■□□ 2.86
USP48Q86UV5 DUX4L29-201ENST00000425409 679 ntBASIC32.89■■■□□ 2.86
USP48Q86UV5 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
USP48Q86UV5 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.87■■■□□ 2.85
USP48Q86UV5 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
USP48Q86UV5 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC32.83■■■□□ 2.85
USP48Q86UV5 RPS2-209ENST00000529806 993 ntTSL 3 BASIC32.83■■■□□ 2.85
USP48Q86UV5 WASH5P-204ENST00000632292 975 ntBASIC32.83■■■□□ 2.85
USP48Q86UV5 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.82■■■□□ 2.84
USP48Q86UV5 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
USP48Q86UV5 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms