Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS13DQ5THJ4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
VPS13DQ5THJ4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13DQ5THJ4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS13DQ5THJ4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 WASH5P-204ENST00000632292 975 ntBASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13DQ5THJ4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13DQ5THJ4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS13DQ5THJ4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS13DQ5THJ4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13DQ5THJ4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13DQ5THJ4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
VPS13DQ5THJ4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13DQ5THJ4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS13DQ5THJ4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 AC021231.2-201ENST00000594613 730 ntBASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 ZNRF2P2-203ENST00000454624 420 ntBASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 MIR4449-201ENST00000578365 66 ntBASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13DQ5THJ4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13DQ5THJ4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13DQ5THJ4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS13DQ5THJ4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13DQ5THJ4 MIR639-201ENST00000384974 98 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MIR3648-2-201ENST00000581792 180 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MIR3648-1-201ENST00000615959 180 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 CR559946.2-201ENST00000623684 991 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 HSD17B1P1-201ENST00000590052 955 ntBASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 MIR6090-201ENST00000622481 60 ntBASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13DQ5THJ4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13DQ5THJ4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13DQ5THJ4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 DUX4L29-201ENST00000425409 679 ntBASIC18.46■□□□□ 0.55
VPS13DQ5THJ4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13DQ5THJ4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms