Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HOXC6P09630 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HOXC6P09630 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.32■■■□□ 2.6
HOXC6P09630 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HOXC6P09630 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HOXC6P09630 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HOXC6P09630 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.31■■■□□ 2.6
HOXC6P09630 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.31■■■□□ 2.6
HOXC6P09630 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.31■■■□□ 2.6
HOXC6P09630 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.3■■■□□ 2.6
HOXC6P09630 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.3■■■□□ 2.6
HOXC6P09630 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.3■■■□□ 2.6
HOXC6P09630 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.29■■■□□ 2.6
HOXC6P09630 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.29■■■□□ 2.6
HOXC6P09630 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.29■■■□□ 2.6
HOXC6P09630 HLA-V-202ENST00000446817 847 ntBASIC31.28■■■□□ 2.6
HOXC6P09630 ZNRF2P2-203ENST00000454624 420 ntBASIC31.27■■■□□ 2.6
HOXC6P09630 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.6
HOXC6P09630 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HOXC6P09630 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
HOXC6P09630 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
HOXC6P09630 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
HOXC6P09630 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
HOXC6P09630 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
HOXC6P09630 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
HOXC6P09630 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.18■■■□□ 2.58
HOXC6P09630 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
HOXC6P09630 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.16■■■□□ 2.58
HOXC6P09630 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HOXC6P09630 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
HOXC6P09630 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
HOXC6P09630 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
HOXC6P09630 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
HOXC6P09630 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HOXC6P09630 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
HOXC6P09630 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.12■■■□□ 2.57
HOXC6P09630 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.12■■■□□ 2.57
HOXC6P09630 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
HOXC6P09630 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.11■■■□□ 2.57
HOXC6P09630 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.1■■■□□ 2.57
HOXC6P09630 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.09■■■□□ 2.57
HOXC6P09630 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
HOXC6P09630 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.07■■■□□ 2.56
HOXC6P09630 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
HOXC6P09630 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
HOXC6P09630 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
HOXC6P09630 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
HOXC6P09630 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
HOXC6P09630 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
HOXC6P09630 DUX4L29-201ENST00000425409 679 ntBASIC31.02■■■□□ 2.56
HOXC6P09630 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.01■■■□□ 2.55
HOXC6P09630 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
HOXC6P09630 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
HOXC6P09630 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31■■■□□ 2.55
HOXC6P09630 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
HOXC6P09630 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
HOXC6P09630 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
HOXC6P09630 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
HOXC6P09630 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
HOXC6P09630 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.96■■■□□ 2.55
HOXC6P09630 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
HOXC6P09630 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
HOXC6P09630 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
HOXC6P09630 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.95■■■□□ 2.55
HOXC6P09630 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
HOXC6P09630 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
HOXC6P09630 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.91■■■□□ 2.54
HOXC6P09630 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
HOXC6P09630 AC021231.2-201ENST00000594613 730 ntBASIC30.91■■■□□ 2.54
HOXC6P09630 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
HOXC6P09630 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.89■■■□□ 2.54
HOXC6P09630 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
HOXC6P09630 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
HOXC6P09630 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.88■■■□□ 2.53
HOXC6P09630 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.87■■■□□ 2.53
HOXC6P09630 MIR4449-201ENST00000578365 66 ntBASIC30.87■■■□□ 2.53
HOXC6P09630 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.86■■■□□ 2.53
HOXC6P09630 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
HOXC6P09630 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.85■■■□□ 2.53
HOXC6P09630 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
HOXC6P09630 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
HOXC6P09630 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
HOXC6P09630 MIR639-201ENST00000384974 98 ntBASIC30.83■■■□□ 2.53
HOXC6P09630 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.83■■■□□ 2.53
HOXC6P09630 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.82■■■□□ 2.52
HOXC6P09630 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.82■■■□□ 2.52
HOXC6P09630 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
HOXC6P09630 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.79■■■□□ 2.52
HOXC6P09630 AC108673.1-201ENST00000510422 1159 ntBASIC30.79■■■□□ 2.52
HOXC6P09630 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.79■■■□□ 2.52
HOXC6P09630 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
HOXC6P09630 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
HOXC6P09630 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.78■■■□□ 2.52
HOXC6P09630 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.77■■■□□ 2.52
HOXC6P09630 MIR6090-201ENST00000622481 60 ntBASIC30.76■■■□□ 2.51
HOXC6P09630 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
HOXC6P09630 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
HOXC6P09630 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
HOXC6P09630 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
HOXC6P09630 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms