Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PDGFAP04085 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.39■■□□□ 1.66
PDGFAP04085 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.39■■□□□ 1.66
PDGFAP04085 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.38■■□□□ 1.65
PDGFAP04085 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.38■■□□□ 1.65
PDGFAP04085 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
PDGFAP04085 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.38■■□□□ 1.65
PDGFAP04085 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PDGFAP04085 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PDGFAP04085 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PDGFAP04085 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PDGFAP04085 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PDGFAP04085 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.37■■□□□ 1.65
PDGFAP04085 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.36■■□□□ 1.65
PDGFAP04085 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.36■■□□□ 1.65
PDGFAP04085 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.36■■□□□ 1.65
PDGFAP04085 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.35■■□□□ 1.65
PDGFAP04085 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PDGFAP04085 HLA-V-202ENST00000446817 847 ntBASIC25.33■■□□□ 1.65
PDGFAP04085 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
PDGFAP04085 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
PDGFAP04085 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.31■■□□□ 1.64
PDGFAP04085 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.3■■□□□ 1.64
PDGFAP04085 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.3■■□□□ 1.64
PDGFAP04085 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PDGFAP04085 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PDGFAP04085 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PDGFAP04085 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.26■■□□□ 1.63
PDGFAP04085 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.26■■□□□ 1.63
PDGFAP04085 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.25■■□□□ 1.63
PDGFAP04085 ZNRF2P2-203ENST00000454624 420 ntBASIC25.25■■□□□ 1.63
PDGFAP04085 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC25.24■■□□□ 1.63
PDGFAP04085 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
PDGFAP04085 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PDGFAP04085 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.23■■□□□ 1.63
PDGFAP04085 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PDGFAP04085 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
PDGFAP04085 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PDGFAP04085 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PDGFAP04085 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PDGFAP04085 WASH5P-204ENST00000632292 975 ntBASIC25.21■■□□□ 1.63
PDGFAP04085 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PDGFAP04085 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDGFAP04085 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.19■■□□□ 1.62
PDGFAP04085 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDGFAP04085 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.19■■□□□ 1.62
PDGFAP04085 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.18■■□□□ 1.62
PDGFAP04085 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.18■■□□□ 1.62
PDGFAP04085 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDGFAP04085 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFAP04085 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.16■■□□□ 1.62
PDGFAP04085 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.16■■□□□ 1.62
PDGFAP04085 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PDGFAP04085 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.14■■□□□ 1.62
PDGFAP04085 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PDGFAP04085 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PDGFAP04085 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.13■■□□□ 1.61
PDGFAP04085 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
PDGFAP04085 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDGFAP04085 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PDGFAP04085 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.1■■□□□ 1.61
PDGFAP04085 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFAP04085 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.09■■□□□ 1.61
PDGFAP04085 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
PDGFAP04085 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDGFAP04085 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDGFAP04085 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PDGFAP04085 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PDGFAP04085 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.06■■□□□ 1.6
PDGFAP04085 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDGFAP04085 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDGFAP04085 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
PDGFAP04085 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFAP04085 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.03■■□□□ 1.6
PDGFAP04085 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFAP04085 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.03■■□□□ 1.6
PDGFAP04085 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFAP04085 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFAP04085 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFAP04085 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PDGFAP04085 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
PDGFAP04085 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PDGFAP04085 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PDGFAP04085 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25■■□□□ 1.59
PDGFAP04085 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25■■□□□ 1.59
PDGFAP04085 DUX4L29-201ENST00000425409 679 ntBASIC25■■□□□ 1.59
PDGFAP04085 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
PDGFAP04085 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
PDGFAP04085 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PDGFAP04085 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.98■■□□□ 1.59
PDGFAP04085 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.97■■□□□ 1.59
PDGFAP04085 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PDGFAP04085 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFAP04085 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFAP04085 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFAP04085 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.96■■□□□ 1.59
PDGFAP04085 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.96■■□□□ 1.59
PDGFAP04085 AC021231.2-201ENST00000594613 730 ntBASIC24.95■■□□□ 1.58
PDGFAP04085 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PDGFAP04085 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms