Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
ALDH1A1P00352 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
ALDH1A1P00352 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.14■■■□□ 2.74
ALDH1A1P00352 DUX4L29-201ENST00000425409 679 ntBASIC32.13■■■□□ 2.73
ALDH1A1P00352 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.11■■■□□ 2.73
ALDH1A1P00352 MIR639-201ENST00000384974 98 ntBASIC32.11■■■□□ 2.73
ALDH1A1P00352 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
ALDH1A1P00352 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
ALDH1A1P00352 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
ALDH1A1P00352 RPS2-209ENST00000529806 993 ntTSL 3 BASIC32.07■■■□□ 2.72
ALDH1A1P00352 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
ALDH1A1P00352 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.06■■■□□ 2.72
ALDH1A1P00352 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.05■■■□□ 2.72
ALDH1A1P00352 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.04■■■□□ 2.72
ALDH1A1P00352 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
ALDH1A1P00352 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ALDH1A1P00352 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC32.02■■■□□ 2.72
ALDH1A1P00352 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32■■■□□ 2.71
ALDH1A1P00352 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
ALDH1A1P00352 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
ALDH1A1P00352 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
ALDH1A1P00352 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
ALDH1A1P00352 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.95■■■□□ 2.71
ALDH1A1P00352 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
ALDH1A1P00352 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
ALDH1A1P00352 WASH5P-204ENST00000632292 975 ntBASIC31.94■■■□□ 2.7
ALDH1A1P00352 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.93■■■□□ 2.7
ALDH1A1P00352 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.93■■■□□ 2.7
ALDH1A1P00352 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.92■■■□□ 2.7
ALDH1A1P00352 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
ALDH1A1P00352 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
ALDH1A1P00352 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.92■■■□□ 2.7
ALDH1A1P00352 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
ALDH1A1P00352 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
ALDH1A1P00352 HSD17B1P1-201ENST00000590052 955 ntBASIC31.89■■■□□ 2.7
ALDH1A1P00352 AC021231.2-201ENST00000594613 730 ntBASIC31.88■■■□□ 2.69
ALDH1A1P00352 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
ALDH1A1P00352 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.87■■■□□ 2.69
ALDH1A1P00352 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.86■■■□□ 2.69
ALDH1A1P00352 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
ALDH1A1P00352 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.85■■■□□ 2.69
ALDH1A1P00352 MIR3648-2-201ENST00000581792 180 ntBASIC31.84■■■□□ 2.69
ALDH1A1P00352 MIR3648-1-201ENST00000615959 180 ntBASIC31.84■■■□□ 2.69
ALDH1A1P00352 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.83■■■□□ 2.69
ALDH1A1P00352 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
ALDH1A1P00352 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
ALDH1A1P00352 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.81■■■□□ 2.68
ALDH1A1P00352 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
ALDH1A1P00352 AC016575.1-201ENST00000607026 382 ntBASIC31.81■■■□□ 2.68
ALDH1A1P00352 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.81■■■□□ 2.68
ALDH1A1P00352 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
ALDH1A1P00352 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.8■■■□□ 2.68
ALDH1A1P00352 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
ALDH1A1P00352 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
ALDH1A1P00352 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.78■■■□□ 2.68
ALDH1A1P00352 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.76■■■□□ 2.67
ALDH1A1P00352 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
ALDH1A1P00352 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.75■■■□□ 2.67
ALDH1A1P00352 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
ALDH1A1P00352 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.75■■■□□ 2.67
ALDH1A1P00352 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.74■■■□□ 2.67
ALDH1A1P00352 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
ALDH1A1P00352 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
ALDH1A1P00352 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.73■■■□□ 2.67
ALDH1A1P00352 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
ALDH1A1P00352 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.72■■■□□ 2.67
ALDH1A1P00352 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
ALDH1A1P00352 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
ALDH1A1P00352 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ALDH1A1P00352 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
ALDH1A1P00352 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
ALDH1A1P00352 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
ALDH1A1P00352 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.67■■■□□ 2.66
ALDH1A1P00352 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
ALDH1A1P00352 AC108673.1-201ENST00000510422 1159 ntBASIC31.66■■■□□ 2.66
ALDH1A1P00352 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.65■■■□□ 2.66
ALDH1A1P00352 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
ALDH1A1P00352 DUX4L11-201ENST00000611504 1267 ntBASIC31.63■■■□□ 2.65
ALDH1A1P00352 DUX4L12-201ENST00000614593 1267 ntBASIC31.63■■■□□ 2.65
ALDH1A1P00352 LINC01971-201ENST00000617888 1048 ntBASIC31.63■■■□□ 2.65
ALDH1A1P00352 DUX4L14-201ENST00000621227 1267 ntBASIC31.63■■■□□ 2.65
ALDH1A1P00352 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
ALDH1A1P00352 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
ALDH1A1P00352 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.61■■■□□ 2.65
ALDH1A1P00352 CR559946.2-201ENST00000623684 991 ntBASIC31.6■■■□□ 2.65
ALDH1A1P00352 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
ALDH1A1P00352 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.57■■■□□ 2.64
ALDH1A1P00352 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
ALDH1A1P00352 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
ALDH1A1P00352 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.53■■■□□ 2.64
ALDH1A1P00352 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
ALDH1A1P00352 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.53■■■□□ 2.64
ALDH1A1P00352 MIR6090-201ENST00000622481 60 ntBASIC31.53■■■□□ 2.64
ALDH1A1P00352 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
ALDH1A1P00352 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ALDH1A1P00352 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ALDH1A1P00352 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.52■■■□□ 2.64
ALDH1A1P00352 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
ALDH1A1P00352 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
ALDH1A1P00352 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.51■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms