Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGB3O15347 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB3O15347 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
HMGB3O15347 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGB3O15347 ABCB10P3-201ENST00000561950 2166 ntBASIC21.81■■□□□ 1.08
HMGB3O15347 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB3O15347 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB3O15347 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB3O15347 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB3O15347 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGB3O15347 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HMGB3O15347 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB3O15347 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB3O15347 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB3O15347 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGB3O15347 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB3O15347 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB3O15347 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB3O15347 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB3O15347 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB3O15347 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB3O15347 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB3O15347 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB3O15347 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB3O15347 AC139426.1-201ENST00000568218 2529 ntBASIC21.71■■□□□ 1.07
HMGB3O15347 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB3O15347 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB3O15347 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB3O15347 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB3O15347 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB3O15347 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB3O15347 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HMGB3O15347 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB3O15347 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB3O15347 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.64■■□□□ 1.06
HMGB3O15347 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
HMGB3O15347 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB3O15347 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HMGB3O15347 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGB3O15347 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB3O15347 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB3O15347 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB3O15347 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB3O15347 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB3O15347 AC120057.4-201ENST00000624722 1615 ntBASIC21.58■■□□□ 1.04
HMGB3O15347 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGB3O15347 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB3O15347 INO80B-203ENST00000409917 796 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB3O15347 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
HMGB3O15347 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB3O15347 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB3O15347 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGB3O15347 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB3O15347 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB3O15347 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HMGB3O15347 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB3O15347 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGB3O15347 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB3O15347 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
HMGB3O15347 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB3O15347 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB3O15347 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB3O15347 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGB3O15347 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB3O15347 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB3O15347 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HMGB3O15347 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB3O15347 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGB3O15347 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB3O15347 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB3O15347 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGB3O15347 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB3O15347 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
HMGB3O15347 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
HMGB3O15347 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms