Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC016575.1-201ENST00000607026 382 ntBASIC27.08■■□□□ 1.93
CACNA1AO00555 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.07■■□□□ 1.92
CACNA1AO00555 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1AO00555 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.06■■□□□ 1.92
CACNA1AO00555 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1AO00555 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.05■■□□□ 1.92
CACNA1AO00555 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1AO00555 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1AO00555 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.04■■□□□ 1.92
CACNA1AO00555 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
CACNA1AO00555 CR559946.2-201ENST00000623684 991 ntBASIC27.02■■□□□ 1.92
CACNA1AO00555 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.02■■□□□ 1.92
CACNA1AO00555 DUX4L29-201ENST00000425409 679 ntBASIC27■■□□□ 1.91
CACNA1AO00555 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27■■□□□ 1.91
CACNA1AO00555 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27■■□□□ 1.91
CACNA1AO00555 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27■■□□□ 1.91
CACNA1AO00555 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1AO00555 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1AO00555 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.98■■□□□ 1.91
CACNA1AO00555 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.98■■□□□ 1.91
CACNA1AO00555 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1AO00555 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1AO00555 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.96■■□□□ 1.91
CACNA1AO00555 RARRES2P2-201ENST00000394842 485 ntBASIC26.94■■□□□ 1.9
CACNA1AO00555 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.94■■□□□ 1.9
CACNA1AO00555 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.94■■□□□ 1.9
CACNA1AO00555 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.93■■□□□ 1.9
CACNA1AO00555 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CACNA1AO00555 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CACNA1AO00555 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.91■■□□□ 1.9
CACNA1AO00555 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.91■■□□□ 1.9
CACNA1AO00555 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC26.91■■□□□ 1.9
CACNA1AO00555 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
CACNA1AO00555 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CACNA1AO00555 ABHD17AP5-201ENST00000580133 923 ntBASIC26.89■■□□□ 1.9
CACNA1AO00555 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CACNA1AO00555 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CACNA1AO00555 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
CACNA1AO00555 AC021231.2-201ENST00000594613 730 ntBASIC26.85■■□□□ 1.89
CACNA1AO00555 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
CACNA1AO00555 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CACNA1AO00555 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CACNA1AO00555 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CACNA1AO00555 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
CACNA1AO00555 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CACNA1AO00555 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
CACNA1AO00555 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CACNA1AO00555 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1AO00555 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.75■■□□□ 1.87
CACNA1AO00555 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1AO00555 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1AO00555 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1AO00555 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1AO00555 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1AO00555 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CACNA1AO00555 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
CACNA1AO00555 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
CACNA1AO00555 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.7■■□□□ 1.86
CACNA1AO00555 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1AO00555 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CACNA1AO00555 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.69■■□□□ 1.86
CACNA1AO00555 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.68■■□□□ 1.86
CACNA1AO00555 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
CACNA1AO00555 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.67■■□□□ 1.86
CACNA1AO00555 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.67■■□□□ 1.86
CACNA1AO00555 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CACNA1AO00555 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.67■■□□□ 1.86
CACNA1AO00555 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CACNA1AO00555 LINC01971-201ENST00000617888 1048 ntBASIC26.66■■□□□ 1.86
CACNA1AO00555 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.66■■□□□ 1.86
CACNA1AO00555 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.65■■□□□ 1.86
CACNA1AO00555 DUX4L11-201ENST00000611504 1267 ntBASIC26.65■■□□□ 1.86
CACNA1AO00555 DUX4L12-201ENST00000614593 1267 ntBASIC26.65■■□□□ 1.86
CACNA1AO00555 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CACNA1AO00555 DUX4L14-201ENST00000621227 1267 ntBASIC26.65■■□□□ 1.86
CACNA1AO00555 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.64■■□□□ 1.86
CACNA1AO00555 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.63■■□□□ 1.85
CACNA1AO00555 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.63■■□□□ 1.85
CACNA1AO00555 MIR935-201ENST00000401179 91 ntBASIC26.62■■□□□ 1.85
CACNA1AO00555 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1AO00555 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.6■■□□□ 1.85
CACNA1AO00555 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.6■■□□□ 1.85
CACNA1AO00555 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1AO00555 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.58■■□□□ 1.85
CACNA1AO00555 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.58■■□□□ 1.85
CACNA1AO00555 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
CACNA1AO00555 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.57■■□□□ 1.84
CACNA1AO00555 RNF126P1-201ENST00000567452 1320 ntBASIC26.55■■□□□ 1.84
CACNA1AO00555 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
CACNA1AO00555 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CACNA1AO00555 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CACNA1AO00555 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
CACNA1AO00555 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1AO00555 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CACNA1AO00555 AC012354.3-201ENST00000623734 483 ntBASIC26.51■■□□□ 1.83
CACNA1AO00555 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1AO00555 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.48■■□□□ 1.83
CACNA1AO00555 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CACNA1AO00555 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
CACNA1AO00555 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms