Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.49■■■□□ 2.47
TRIM43BA6NCK2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.49■■■□□ 2.47
TRIM43BA6NCK2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
TRIM43BA6NCK2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM43BA6NCK2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM43BA6NCK2 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.45■■■□□ 2.47
TRIM43BA6NCK2 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.45■■■□□ 2.47
TRIM43BA6NCK2 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 MIR4449-201ENST00000578365 66 ntBASIC30.43■■■□□ 2.46
TRIM43BA6NCK2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM43BA6NCK2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.4■■■□□ 2.46
TRIM43BA6NCK2 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM43BA6NCK2 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
TRIM43BA6NCK2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.38■■■□□ 2.45
TRIM43BA6NCK2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TRIM43BA6NCK2 DUX4L29-201ENST00000425409 679 ntBASIC30.37■■■□□ 2.45
TRIM43BA6NCK2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM43BA6NCK2 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 MIR639-201ENST00000384974 98 ntBASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 WASH5P-204ENST00000632292 975 ntBASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.3■■■□□ 2.44
TRIM43BA6NCK2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.3■■■□□ 2.44
TRIM43BA6NCK2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM43BA6NCK2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.27■■■□□ 2.44
TRIM43BA6NCK2 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.27■■■□□ 2.44
TRIM43BA6NCK2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
TRIM43BA6NCK2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRIM43BA6NCK2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.26■■■□□ 2.43
TRIM43BA6NCK2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.25■■■□□ 2.43
TRIM43BA6NCK2 AC021231.2-201ENST00000594613 730 ntBASIC30.25■■■□□ 2.43
TRIM43BA6NCK2 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
TRIM43BA6NCK2 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TRIM43BA6NCK2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.22■■■□□ 2.43
TRIM43BA6NCK2 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM43BA6NCK2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM43BA6NCK2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM43BA6NCK2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM43BA6NCK2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
TRIM43BA6NCK2 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 HSD17B1P1-201ENST00000590052 955 ntBASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.14■■■□□ 2.42
TRIM43BA6NCK2 AC016575.1-201ENST00000607026 382 ntBASIC30.14■■■□□ 2.42
TRIM43BA6NCK2 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 MIR3648-2-201ENST00000581792 180 ntBASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 MIR3648-1-201ENST00000615959 180 ntBASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.1■■■□□ 2.41
TRIM43BA6NCK2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
TRIM43BA6NCK2 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.09■■■□□ 2.41
TRIM43BA6NCK2 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
TRIM43BA6NCK2 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.07■■■□□ 2.4
TRIM43BA6NCK2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.05■■■□□ 2.4
TRIM43BA6NCK2 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
TRIM43BA6NCK2 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM43BA6NCK2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
TRIM43BA6NCK2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30■■■□□ 2.39
TRIM43BA6NCK2 MIR6090-201ENST00000622481 60 ntBASIC30■■■□□ 2.39
TRIM43BA6NCK2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
TRIM43BA6NCK2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CR559946.2-201ENST00000623684 991 ntBASIC29.97■■■□□ 2.39
TRIM43BA6NCK2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L11-201ENST00000611504 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L12-201ENST00000614593 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L14-201ENST00000621227 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 AC108673.1-201ENST00000510422 1159 ntBASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.91■■■□□ 2.38
TRIM43BA6NCK2 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.89■■■□□ 2.38
TRIM43BA6NCK2 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.89■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms