Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM43BA6NCK2 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.49■■■□□ 2.47
TRIM43BA6NCK2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.49■■■□□ 2.47
TRIM43BA6NCK2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
TRIM43BA6NCK2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM43BA6NCK2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM43BA6NCK2 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.45■■■□□ 2.47
TRIM43BA6NCK2 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.45■■■□□ 2.47
TRIM43BA6NCK2 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM43BA6NCK2 MIR4449-201ENST00000578365 66 ntBASIC30.43■■■□□ 2.46
TRIM43BA6NCK2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM43BA6NCK2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.4■■■□□ 2.46
TRIM43BA6NCK2 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM43BA6NCK2 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
TRIM43BA6NCK2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.38■■■□□ 2.45
TRIM43BA6NCK2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TRIM43BA6NCK2 DUX4L29-201ENST00000425409 679 ntBASIC30.37■■■□□ 2.45
TRIM43BA6NCK2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM43BA6NCK2 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 MIR639-201ENST00000384974 98 ntBASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 WASH5P-204ENST00000632292 975 ntBASIC30.33■■■□□ 2.45
TRIM43BA6NCK2 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.3■■■□□ 2.44
TRIM43BA6NCK2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.3■■■□□ 2.44
TRIM43BA6NCK2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM43BA6NCK2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.27■■■□□ 2.44
TRIM43BA6NCK2 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.27■■■□□ 2.44
TRIM43BA6NCK2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
TRIM43BA6NCK2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRIM43BA6NCK2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.26■■■□□ 2.43
TRIM43BA6NCK2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.25■■■□□ 2.43
TRIM43BA6NCK2 AC021231.2-201ENST00000594613 730 ntBASIC30.25■■■□□ 2.43
TRIM43BA6NCK2 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
TRIM43BA6NCK2 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TRIM43BA6NCK2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.22■■■□□ 2.43
TRIM43BA6NCK2 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM43BA6NCK2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM43BA6NCK2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM43BA6NCK2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM43BA6NCK2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
TRIM43BA6NCK2 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
TRIM43BA6NCK2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 HSD17B1P1-201ENST00000590052 955 ntBASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM43BA6NCK2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.14■■■□□ 2.42
TRIM43BA6NCK2 AC016575.1-201ENST00000607026 382 ntBASIC30.14■■■□□ 2.42
TRIM43BA6NCK2 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 MIR3648-2-201ENST00000581792 180 ntBASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 MIR3648-1-201ENST00000615959 180 ntBASIC30.13■■■□□ 2.41
TRIM43BA6NCK2 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM43BA6NCK2 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM43BA6NCK2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.1■■■□□ 2.41
TRIM43BA6NCK2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
TRIM43BA6NCK2 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.09■■■□□ 2.41
TRIM43BA6NCK2 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
TRIM43BA6NCK2 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.07■■■□□ 2.4
TRIM43BA6NCK2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.05■■■□□ 2.4
TRIM43BA6NCK2 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
TRIM43BA6NCK2 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM43BA6NCK2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
TRIM43BA6NCK2 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
TRIM43BA6NCK2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30■■■□□ 2.39
TRIM43BA6NCK2 MIR6090-201ENST00000622481 60 ntBASIC30■■■□□ 2.39
TRIM43BA6NCK2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
TRIM43BA6NCK2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
TRIM43BA6NCK2 CR559946.2-201ENST00000623684 991 ntBASIC29.97■■■□□ 2.39
TRIM43BA6NCK2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L11-201ENST00000611504 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L12-201ENST00000614593 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 DUX4L14-201ENST00000621227 1267 ntBASIC29.95■■■□□ 2.39
TRIM43BA6NCK2 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.93■■■□□ 2.38
TRIM43BA6NCK2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 AC108673.1-201ENST00000510422 1159 ntBASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.92■■■□□ 2.38
TRIM43BA6NCK2 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.91■■■□□ 2.38
TRIM43BA6NCK2 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.89■■■□□ 2.38
TRIM43BA6NCK2 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.89■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms