Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
DDX56Q9NY93 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX56Q9NY93 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 DUX4L19-201ENST00000557448 1267 ntBASIC22.59■■□□□ 1.21
DDX56Q9NY93 AL138724.1-201ENST00000606771 1088 ntBASIC22.59■■□□□ 1.21
DDX56Q9NY93 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.59■■□□□ 1.21
DDX56Q9NY93 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX56Q9NY93 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX56Q9NY93 AC087239.1-201ENST00000622671 572 ntBASIC22.58■■□□□ 1.21
DDX56Q9NY93 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX56Q9NY93 AC010542.4-201ENST00000563151 1910 ntBASIC22.58■■□□□ 1.21
DDX56Q9NY93 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
DDX56Q9NY93 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
DDX56Q9NY93 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.57■■□□□ 1.2
DDX56Q9NY93 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 FAM99A-202ENST00000538190 1989 ntBASIC22.57■■□□□ 1.2
DDX56Q9NY93 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX56Q9NY93 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
DDX56Q9NY93 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 SYT6-210ENST00000641643 1587 ntBASIC22.56■■□□□ 1.2
DDX56Q9NY93 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 MIR4466-201ENST00000606121 54 ntBASIC22.56■■□□□ 1.2
DDX56Q9NY93 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX56Q9NY93 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
DDX56Q9NY93 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
DDX56Q9NY93 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX56Q9NY93 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX56Q9NY93 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
DDX56Q9NY93 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX56Q9NY93 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.55■■□□□ 1.2
DDX56Q9NY93 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX56Q9NY93 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX56Q9NY93 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.55■■□□□ 1.2
DDX56Q9NY93 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX56Q9NY93 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
DDX56Q9NY93 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX56Q9NY93 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX56Q9NY93 SERBP1P1-201ENST00000396021 1160 ntBASIC22.54■■□□□ 1.2
DDX56Q9NY93 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX56Q9NY93 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX56Q9NY93 OR7E47P-201ENST00000546390 1422 ntBASIC22.54■■□□□ 1.2
DDX56Q9NY93 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX56Q9NY93 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX56Q9NY93 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.53■■□□□ 1.2
DDX56Q9NY93 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 AC010141.3-201ENST00000456659 717 ntBASIC22.53■■□□□ 1.2
DDX56Q9NY93 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.53■■□□□ 1.2
DDX56Q9NY93 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms