Protein–RNA interactions for Protein: Q8NE63

HIPK4, Homeodomain-interacting protein kinase 4, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK4Q8NE63 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HIPK4Q8NE63 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIPK4Q8NE63 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HIPK4Q8NE63 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 MIR4508-201ENST00000584178 70 ntBASIC20.91■□□□□ 0.94
HIPK4Q8NE63 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIPK4Q8NE63 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.9■□□□□ 0.94
HIPK4Q8NE63 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HIPK4Q8NE63 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.89■□□□□ 0.93
HIPK4Q8NE63 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 AF106564.1-201ENST00000607058 2553 ntBASIC20.88■□□□□ 0.93
HIPK4Q8NE63 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HIPK4Q8NE63 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIPK4Q8NE63 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.87■□□□□ 0.93
HIPK4Q8NE63 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HIPK4Q8NE63 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms