Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 AC008694.1-202ENST00000636953 945 ntBASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SMC1BQ8NDV3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 AC093787.1-201ENST00000450396 207 ntBASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 KRT18P20-201ENST00000548986 1279 ntBASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.01■■□□□ 1.75
SMC1BQ8NDV3 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
SMC1BQ8NDV3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26■■□□□ 1.75
SMC1BQ8NDV3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26■■□□□ 1.75
SMC1BQ8NDV3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26■■□□□ 1.75
SMC1BQ8NDV3 SERP1-208ENST00000491660 830 ntTSL 2 BASIC26■■□□□ 1.75
SMC1BQ8NDV3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC26■■□□□ 1.75
SMC1BQ8NDV3 AL359736.2-201ENST00000621992 437 ntBASIC26■■□□□ 1.75
SMC1BQ8NDV3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
SMC1BQ8NDV3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 AC009237.3-201ENST00000393279 1427 ntBASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 TERF1P5-201ENST00000477545 1207 ntBASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SMC1BQ8NDV3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 UQCRFS1P1-201ENST00000435169 820 ntBASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC25.98■■□□□ 1.75
SMC1BQ8NDV3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 AP003097.1-201ENST00000530657 1135 ntBASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 AC069236.1-201ENST00000604339 616 ntBASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 AC016405.3-201ENST00000607710 860 ntBASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 OXCT2P1-201ENST00000447263 1535 ntBASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 HLA-L-211ENST00000482052 1765 ntBASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SMC1BQ8NDV3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 AC091874.3-201ENST00000512672 1195 ntBASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
SMC1BQ8NDV3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
SMC1BQ8NDV3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.75
SMC1BQ8NDV3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 AC007322.4-201ENST00000509611 723 ntBASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.95■■□□□ 1.74
SMC1BQ8NDV3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.94■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms