Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CX3CL1P78423 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.41■□□□□ 0.38
CX3CL1P78423 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.41■□□□□ 0.38
CX3CL1P78423 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.41■□□□□ 0.38
CX3CL1P78423 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.41■□□□□ 0.38
CX3CL1P78423 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CX3CL1P78423 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 OR2I1P-207ENST00000453522 948 ntBASIC17.4■□□□□ 0.38
CX3CL1P78423 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 AC024257.2-201ENST00000549699 147 ntBASIC17.4■□□□□ 0.38
CX3CL1P78423 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CX3CL1P78423 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 ECEL1P1-201ENST00000373592 1742 ntBASIC17.4■□□□□ 0.38
CX3CL1P78423 AC087742.1-201ENST00000575880 1738 ntBASIC17.4■□□□□ 0.38
CX3CL1P78423 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.4■□□□□ 0.38
CX3CL1P78423 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.4■□□□□ 0.38
CX3CL1P78423 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.4■□□□□ 0.38
CX3CL1P78423 AC135279.3-201ENST00000610945 1311 ntBASIC17.4■□□□□ 0.38
CX3CL1P78423 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CX3CL1P78423 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
CX3CL1P78423 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.39■□□□□ 0.37
CX3CL1P78423 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.39■□□□□ 0.37
CX3CL1P78423 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.39■□□□□ 0.37
CX3CL1P78423 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CX3CL1P78423 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.39■□□□□ 0.37
CX3CL1P78423 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CL1P78423 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CX3CL1P78423 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CX3CL1P78423 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.38■□□□□ 0.37
CX3CL1P78423 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
CX3CL1P78423 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.38■□□□□ 0.37
CX3CL1P78423 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CL1P78423 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.37■□□□□ 0.37
CX3CL1P78423 PBX2P1-201ENST00000493219 1291 ntBASIC17.37■□□□□ 0.37
CX3CL1P78423 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 MIR4767-201ENST00000582827 78 ntBASIC17.37■□□□□ 0.37
CX3CL1P78423 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CX3CL1P78423 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CL1P78423 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CX3CL1P78423 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CX3CL1P78423 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.36■□□□□ 0.37
CX3CL1P78423 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.36■□□□□ 0.37
CX3CL1P78423 AC010525.1-201ENST00000585559 441 ntBASIC17.36■□□□□ 0.37
CX3CL1P78423 AC110285.6-201ENST00000617652 491 ntBASIC17.36■□□□□ 0.37
CX3CL1P78423 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CL1P78423 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms