Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLPTM1O96005 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.35■□□□□ 0.85
CLPTM1O96005 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLPTM1O96005 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLPTM1O96005 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLPTM1O96005 AF106564.1-201ENST00000607058 2553 ntBASIC20.34■□□□□ 0.85
CLPTM1O96005 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLPTM1O96005 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.34■□□□□ 0.85
CLPTM1O96005 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CLPTM1O96005 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CLPTM1O96005 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLPTM1O96005 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.34■□□□□ 0.85
CLPTM1O96005 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLPTM1O96005 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLPTM1O96005 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLPTM1O96005 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLPTM1O96005 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
CLPTM1O96005 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.33■□□□□ 0.85
CLPTM1O96005 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.33■□□□□ 0.85
CLPTM1O96005 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CLPTM1O96005 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLPTM1O96005 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CLPTM1O96005 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLPTM1O96005 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLPTM1O96005 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CLPTM1O96005 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CLPTM1O96005 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 YBX1P4-201ENST00000392794 808 ntBASIC20.32■□□□□ 0.84
CLPTM1O96005 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CLPTM1O96005 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.32■□□□□ 0.84
CLPTM1O96005 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLPTM1O96005 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.32■□□□□ 0.84
CLPTM1O96005 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.32■□□□□ 0.84
CLPTM1O96005 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.31■□□□□ 0.84
CLPTM1O96005 AC244015.2-201ENST00000616358 1861 ntBASIC20.31■□□□□ 0.84
CLPTM1O96005 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CLPTM1O96005 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.31■□□□□ 0.84
CLPTM1O96005 MIR4508-201ENST00000584178 70 ntBASIC20.31■□□□□ 0.84
CLPTM1O96005 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.31■□□□□ 0.84
CLPTM1O96005 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLPTM1O96005 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.3■□□□□ 0.84
CLPTM1O96005 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.3■□□□□ 0.84
CLPTM1O96005 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CLPTM1O96005 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.3■□□□□ 0.84
CLPTM1O96005 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CLPTM1O96005 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.3■□□□□ 0.84
CLPTM1O96005 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.3■□□□□ 0.84
CLPTM1O96005 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLPTM1O96005 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.3■□□□□ 0.84
CLPTM1O96005 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.29■□□□□ 0.84
CLPTM1O96005 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.29■□□□□ 0.84
CLPTM1O96005 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLPTM1O96005 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLPTM1O96005 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLPTM1O96005 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLPTM1O96005 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLPTM1O96005 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLPTM1O96005 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.28■□□□□ 0.84
CLPTM1O96005 AC087742.1-201ENST00000575880 1738 ntBASIC20.28■□□□□ 0.84
CLPTM1O96005 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.28■□□□□ 0.84
CLPTM1O96005 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms