Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV39A0A0B4J263 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV39A0A0B4J263 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 CA15P2-201ENST00000611168 834 ntBASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV39A0A0B4J263 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 AL137060.1-201ENST00000618151 2648 ntBASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRAV39A0A0B4J263 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV39A0A0B4J263 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 AC131281.2-201ENST00000520478 145 ntBASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 AC010525.1-201ENST00000585559 441 ntBASIC18.09■□□□□ 0.49
TRAV39A0A0B4J263 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms