Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 AC099791.1-201ENST00000416440 715 ntBASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 AC139530.1-201ENST00000575312 1977 ntBASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
PTCHD3Q3KNS1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 RASA4CP-201ENST00000424092 1398 ntBASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTCHD3Q3KNS1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 AC137767.1-201ENST00000602918 1920 ntBASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTCHD3Q3KNS1 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 OR2I1P-207ENST00000453522 948 ntBASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 RARRES2P6-201ENST00000567333 442 ntBASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 AL031602.1-201ENST00000633169 911 ntBASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTCHD3Q3KNS1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTCHD3Q3KNS1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms